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FASTA Sequence PDB Format mmCIF Format
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9Y5Y

Structure of the omicron spike rbd bound by the monobody s19382 (local refinement from dimerized spike protein ecds)

PDB DOI: 10.2210/pdb9y5y/pdb

Classification: ANTIVIRAL PROTEIN/VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct

Deposited: 2025-09-05
Deposition Author(s): Huang, P. , Noland, C.L. , Perez, C.P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.16 Å

9y5y
Literature

Structure of the omicron spike rbd bound by the monobody s19382 (local refinement from dimerized spike protein ecds)

Huang, P. , Noland, C.L. , Perez, C.P.

Primary Citation of Related Structures: 9Y5Y


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 195 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPK
Spike protein S1 C 195 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPK
Spike protein S1 E 195 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPK
Spike protein S1 G 195 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPK
Monobody s19382 B 89 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TKLEVVAATPTSLLISWRMPMFTVDFYVIQYGETGGNSPVQVQVVPGSTRTATISGLKPGVDYTITVYAYVQRDNLHYPHPISINYRTG
Monobody s19382 D 89 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TKLEVVAATPTSLLISWRMPMFTVDFYVIQYGETGGNSPVQVQVVPGSTRTATISGLKPGVDYTITVYAYVQRDNLHYPHPISINYRTG
Monobody s19382 F 89 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TKLEVVAATPTSLLISWRMPMFTVDFYVIQYGETGGNSPVQVQVVPGSTRTATISGLKPGVDYTITVYAYVQRDNLHYPHPISINYRTG
Monobody s19382 H 89 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TKLEVVAATPTSLLISWRMPMFTVDFYVIQYGETGGNSPVQVQVVPGSTRTATISGLKPGVDYTITVYAYVQRDNLHYPHPISINYRTG
Monobody s19382 I 89 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TKLEVVAATPTSLLISWRMPMFTVDFYVIQYGETGGNSPVQVQVVPGSTRTATISGLKPGVDYTITVYAYVQRDNLHYPHPISINYRTG
Monobody s19382 J 89 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TKLEVVAATPTSLLISWRMPMFTVDFYVIQYGETGGNSPVQVQVVPGSTRTATISGLKPGVDYTITVYAYVQRDNLHYPHPISINYRTG
Monobody s19382 K 89 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TKLEVVAATPTSLLISWRMPMFTVDFYVIQYGETGGNSPVQVQVVPGSTRTATISGLKPGVDYTITVYAYVQRDNLHYPHPISINYRTG
Monobody s19382 L 89 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TKLEVVAATPTSLLISWRMPMFTVDFYVIQYGETGGNSPVQVQVVPGSTRTATISGLKPGVDYTITVYAYVQRDNLHYPHPISINYRTG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-09-05
Deposition Author(s): Huang, P. , Noland, C.L. , Perez, C.P.