Crystal structure of l-threonate 3-dehydrogenase from paracoccus litorisediminis (nadp+ and tartronate bound form)
PDB DOI: 10.2210/pdb9xax/pdb
Classification: OXIDOREDUCTASE Organism(s): Paracoccus Litorisediminis
Deposited: 2025-10-23 Deposition Author(s): Sato, H. , Watanabe, S.
Method: X-RAY DIFFRACTION Resolution: 2.08 Å
Crystal structure of l-threonate 3-dehydrogenase from paracoccus litorisediminis (nadp+ and tartronate bound form)
Primary Citation of Related Structures: 9XAX
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| SDR family NAD(P)-dependent oxidoreductase | A | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | B | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | C | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | D | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | E | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | F | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | G | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | H | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | I | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | J | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | K | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
| SDR family NAD(P)-dependent oxidoreductase | L | 255 | Paracoccus Litorisediminis | MRGSHHHHHHGSKNILITGGGSGVGRATARRFLIEGWQVGLIGRREDALQETAEDNPNALILPCDVTDEAAVDATFAKVASSWGRLDILFNNAGAVLPSTLIDEITVADWRRVTDVNITGMFLCARAAFRQMRNQQPMGGRIINNGSISADVPRPGSVPYTVSKHAVTGLTRTLSLDGRPFNIACGQVDIGNALTDMAVAMTKGVPQADGSTKIEPVIDVKTVADSVWHMATMPEGANIQWLTVMATNMPYIGRG |
Method: X-RAY DIFFRACTION
Deposited Date: 2025-10-23 Deposition Author(s): Sato, H. , Watanabe, S.