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FASTA Sequence PDB Format mmCIF Format
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9XA0

Structure of the omicron kp.3.1.1 variant spike n-terminal domain(ntd)in complex with the c1717 fab and s2l20 fab

PDB DOI: 10.2210/pdb9xa0/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2025-10-22
Deposition Author(s): Gao, G.F. , Zhou, J.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.51 Å

9xa0
Literature

Structure of the omicron kp.3.1.1 variant spike n-terminal domain(ntd)in complex with the c1717 fab and s2l20 fab

Gao, G.F. , Zhou, J.J.

Primary Citation of Related Structures: 9XA0


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein C 297 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 VSSQCVMPLFNLITTTQSYTNFTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVFIKVCEFQFCNDPFLDVYHKNNKSWMESESGVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIGRDFPQGFSALEPLVDLPIGINITRFQTLLALNRSYLTPGDSSSGWTAGAADYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSHHHHHH
C1717 heavy chain D 233 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGSSVKVSCKTSGGTFNSFAINWVRQAPGQGPEWMGRVIPVLEIANYAQKFQGRITITADKSTSTAYMELSSLTSEDTAIYYCARHHIAVAQPYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH
C1717 light chain E 217 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQHLPGTAPKLLMSSDDQRPSGVPARFSGSKSGTSASLAISGLRSEDEADYYCASWDDRLNGVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
S2L20 heavy chain A 235 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGVVQPGGSLRLSCAASGFTFNSYGMHWVRQAPGKGLEWVAFIRYDGGNKYYADSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCANLKDSRYSGSYYDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHHH
S2L20 light chain B 215 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 VIWMTQSPSSLSASVGDRVTITCQASQDIRFYLNWYQQKPGKAPKLLISDASNMETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPFTFGPGTKVDFKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-10-22
Deposition Author(s): Gao, G.F. , Zhou, J.J.