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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9X25

Target analog-bound type iii-b cmr complex of archaeoglobus fulgidus

PDB DOI: 10.2210/pdb9x25/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct

Deposited: 2025-10-03
Deposition Author(s): Ishihara, K. , Numata, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

9x25
Literature

Target analog-bound type iii-b cmr complex of archaeoglobus fulgidus

Ishihara, K. , Numata, T.

Primary Citation of Related Structures: 9X25


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA a 39 NA AUUGAAAGUUGUAGUAUGCGGUCCUUGCGGCUGAGAGCA
Target analog DNA k 31 NA TGCTCTCAGCCGCAAGGACCGCATACTACAA

Proteins
Molecule Chains Sequence Length Organism Sequence
GGDEF domain-containing protein B 1024 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMGQYFRVSGKYRGRENLPREVNKMADNEFWLNKIRAFFHDPPDKSFELKTHERRASFILGELKPSKSLKRIIKNADIQASSLQRVDLEKSIHKKELKSTFDRIHNTEKYEYIGQPIIRHPVTGEIKEYGTILANLPQTQREVYDVDDEGKEDYEEQFQEILSRILKIEKKVFDDFKNRYSDPKDLYISLWAFYAEKLKEALEEEFSASFAEEFVNLPAYTLSPDHTLFDHADATSAIFGAEIDGKKPVLVLFKISPVQKFIADARKEKDLWAASHMLSTLTFKAISFIADKFGPDVVIYPHLRGNPFFHAWLHSKKIWEFSDSHSLKIASVPNKFLALVGVSDEKELNNLREGIRNEIESFLADLFDKLWNEVIVGALEHSDALKHLGDKKEIHKEILLKRFTLTLSSLKIHDVDVSGSKEEAYEKVKDFVRSLGLPNAIESKYLQWLDMLGSVEASNNRPTKYDLYSLYYEILTVLNAIESTHFDKPAEPAGYKCTLCGEHLAIGGESREMMENVWGKIHKRWPSHLRSNERLCAVCAVKRFYPKFIETLDIFEGVGKVVPDIESVSEVAMCRRTKHGITWKEVYDYLRGLKNVDDEKLLGKLENLKHSVQTLINNVKSELKSRKVYPEEFLEGLNRNFSNEILYSERLRDFNTLLDTLGFDAAKLGLDDVKNYETMISELRERLSEVYKMLGEPPKYYAILMMDGDEMGKLLSGEKLKTAEHYLHSAILERVSDALRVKAKTVRRLITPAAHSSISRALKNFSVNHVPDVVRKGNGTLIYSGGDDVLVLLPVDTAFDVATELAMTFSTSWNGWEMLPGNKLSAGLLIVHYKHPLYDALEKTRELLQKAKKLGRNAIAVGLLKRSGSYYESVVNFETLEDAKAVANLLVKEQVSPRIIYELLNFADVISKEFLHQLVKYEAVRHSIDKNLAEEFQSVFARGHQGVRVELEGNDEEINKYISDGANLETFLDKYEKAVDVIRKQVRGFLNLVKILYESIRGGAK
Type III-B CRISPR module-associated protein Cmr3 C 341 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MILVMKPYDSLLFREPRPFDVNNHVARTILPLPQTLAGAVRSAIYVKYGSKVKDLIGFGKEEPEFEILGHFFYRYDGKFELLVESPHDVTQNLGLVKPHRIDKLGITILMDSEGIKFRPFNGFLKFSGLIDYLQGRIAEDSVVERQKIFKKERRVGIALTKAKVTKEEHFYQVEMLRFSDDCGIAVWVEDGVDFDDEGILGVGGERRFVKFEKREEPECITNLRSKWKKIRDKINETGRLKIYLATPAILGAKGYSSKLDYDLLGDIGIERVRSVNFIGGKPVIFSGWDFVTRKPKPTRYAVPAGSVYFVEFEGEVKLDMPYLKLGKLTKLGYGLCFMGVW
CRISPR type III-associated protein domain-containing protein D 355 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MFDMFEKAVVFGLYSITPVHAGSGAELSVIDLPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVESQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSEIENDIELKQILSRFKVELSNNETIAGNALILNGENKVILEDIVLKVKSDSNVIENLVEVLKTLFGDNFFGKPIESIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKENLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRAGVLTGGHKGN
CRISPR type III-associated protein domain-containing protein E 355 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MFDMFEKAVVFGLYSITPVHAGSGAELSVIDLPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVESQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSEIENDIELKQILSRFKVELSNNETIAGNALILNGENKVILEDIVLKVKSDSNVIENLVEVLKTLFGDNFFGKPIESIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKENLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRAGVLTGGHKGN
CRISPR type III-associated protein domain-containing protein F 355 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MFDMFEKAVVFGLYSITPVHAGSGAELSVIDLPIQRERHTGFPVIWGQSLKGVLRSRFRQLELDEKIEVESQKWKWKEKTKEVLKEKADEFIKKVEERKRDPLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVIQRLKEDFELVSEIENDIELKQILSRFKVELSNNETIAGNALILNGENKVILEDIVLKVKSDSNVIENLVEVLKTLFGDNFFGKPIESIKERIAIVSDDVFKSFTRFSTEIVARVRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKENLPKEVDNTQKIVNVLKVTFNNAFLQIGGDETVGKGFVKVRAGVLTGGHKGN
CRISPR system Cmr subunit Cmr5 G 155 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MDIREIEQERASFAFKVVSDIKDKYSQNKKVQGKYSSYAEKAPTIILNNGLGATLAFFLSKLEKPIDDVDYKSINPESFGNAENIAYAFLYKHLSTWLAEGNGKDSAFSGLTNGEDPLKYIMEKTAIDVAISTEEALSILNWIKKFAKAMLEEEL
CRISPR system Cmr subunit Cmr5 H 155 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MDIREIEQERASFAFKVVSDIKDKYSQNKKVQGKYSSYAEKAPTIILNNGLGATLAFFLSKLEKPIDDVDYKSINPESFGNAENIAYAFLYKHLSTWLAEGNGKDSAFSGLTNGEDPLKYIMEKTAIDVAISTEEALSILNWIKKFAKAMLEEEL
CRISPR type III-associated protein domain-containing protein I 349 Archaeoglobus Fulgidus Dsm 4304 , Synthetic Construct MKSNVVVKYPVNSELANYAEKFWKKELAIYNLSLILNKMTPFVKRRSESYKSSLSAVKEIFKNVDDFQNFLNSVLRRSLDEYRVFFENYERLFNSFSSKIFSMRTKSRLVVGLGDESVYETSIRLHRNYGVPYIPGSALKGVAKHYAFSILARENGDEILRIYESVKEDLKARIAKRDKIKKNDVPEDYYLTAAVIQELFEKKFDELGAIRNTRVEIGDTVISVGDIVKIFGTQKEEGSVIFFDAFPTPEQLKDKPNLELDIMNPHYQPYYQHGEPPGDWHSPNPIFFLTVPAGVEFTFAVASRDLDDLAEKAEKLLKEALKKFGVGAKTSLGYGRFDARDDRHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-10-03
Deposition Author(s): Ishihara, K. , Numata, T.