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FASTA Sequence PDB Format mmCIF Format
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9WMF

Cryo-em strucutre of mbpago-gdna complex

PDB DOI: 10.2210/pdb9wmf/pdb

Classification: RNA BINDING PROTEIN/DNA
Organism(s): Mucilaginibacter Paludis Dsm 18603 , Synthetic Construct

Deposited: 2025-09-03
Deposition Author(s): Li, S. , Zhang, K. , Zhao, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.57 Å

Literature

Cryo-em strucutre of mbpago-gdna complex

Li, S. , Zhang, K. , Zhao, X.

Primary Citation of Related Structures: 9WMF


Proteins
Molecule Chains Sequence Length Organism Sequence
Piwi domain-containing protein A 811 Mucilaginibacter Paludis Dsm 18603 , Synthetic Construct HHHHHHSSGENLYFQGMKDHILNLYRIDNLSELDFSYKLIDFDLSFIAGKEELLNKQLQKIAEEVSSVTKGPTAVLKRNQRFFVAVPADKQMEDRSIDGIPFSIPIKLLPEVYRIDSKDIQGHQLDVVYKFLDYEIRRQLGQHRDLWKLNTHQFFLREPMKGIQGSINVFEGFTYKLARLADGHFYVTLDLSTKYIDKYCLSHYINEGNVRTFENNYKGRRFLYLNGDNWYTIELLGFGKSVKEQDFIREGTTYNVLNYITEKIEHSRTDLKRYVKPNDLSMSYTYPGRTMDPHSGATSLARMLYNTKDERVKSLHYLSIKGPSKRFEAINNYISSYFKNLKFNAGKLLISNEPLVEKIKNFWIPELLFNNNRRLKITGFNSGMRDFAYQRKQLIKNNGVLNRTSFDVQYLLVPDEQYMDANLVEGFKNNAEFLIKKLAPAFDKFIIIRYPVKSCTSASVQIQEIEKVLHRRNALHGFALVVLPDLDAFSPAFLKTFHELLKSKFYPDLKVQCASAHNISSFFKPFSTAGNNGIVEYRVVEALKGRFSSYLFYLVLEHLIVNRKWPYALAKNLFYDIYIGIDVHDRHAGFTFFFKNGEQIIFHPEEVPQKTNSQRVEKVRAKTLNKVIYEKLKLYIPLFAPNPNGIVIVRDGRSFGVEYKALQAAINTLAAEGIVNKDTVKYGVVDLHKQSSVPIRIAAKTNSYDQLENPVAGSYKLVSPKEGFIFSTGYPFDIKGTSRPLNLSMKEGDLDFMKVMEDVFCQIMLAFSAPDKSNFLPVIIKLIDTLLEPLTATRETADEAEEDEEEMMDIN
Piwi domain-containing protein B 811 Mucilaginibacter Paludis Dsm 18603 , Synthetic Construct HHHHHHSSGENLYFQGMKDHILNLYRIDNLSELDFSYKLIDFDLSFIAGKEELLNKQLQKIAEEVSSVTKGPTAVLKRNQRFFVAVPADKQMEDRSIDGIPFSIPIKLLPEVYRIDSKDIQGHQLDVVYKFLDYEIRRQLGQHRDLWKLNTHQFFLREPMKGIQGSINVFEGFTYKLARLADGHFYVTLDLSTKYIDKYCLSHYINEGNVRTFENNYKGRRFLYLNGDNWYTIELLGFGKSVKEQDFIREGTTYNVLNYITEKIEHSRTDLKRYVKPNDLSMSYTYPGRTMDPHSGATSLARMLYNTKDERVKSLHYLSIKGPSKRFEAINNYISSYFKNLKFNAGKLLISNEPLVEKIKNFWIPELLFNNNRRLKITGFNSGMRDFAYQRKQLIKNNGVLNRTSFDVQYLLVPDEQYMDANLVEGFKNNAEFLIKKLAPAFDKFIIIRYPVKSCTSASVQIQEIEKVLHRRNALHGFALVVLPDLDAFSPAFLKTFHELLKSKFYPDLKVQCASAHNISSFFKPFSTAGNNGIVEYRVVEALKGRFSSYLFYLVLEHLIVNRKWPYALAKNLFYDIYIGIDVHDRHAGFTFFFKNGEQIIFHPEEVPQKTNSQRVEKVRAKTLNKVIYEKLKLYIPLFAPNPNGIVIVRDGRSFGVEYKALQAAINTLAAEGIVNKDTVKYGVVDLHKQSSVPIRIAAKTNSYDQLENPVAGSYKLVSPKEGFIFSTGYPFDIKGTSRPLNLSMKEGDLDFMKVMEDVFCQIMLAFSAPDKSNFLPVIIKLIDTLLEPLTATRETADEAEEDEEEMMDIN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
guide DNA (5'-D(P*T)-R(P*GP*AP*GP*G)-D(P*T)-R(P*AP*G)-3') c 18 NA TGAGGTAGTAGGTTGTAT
guide DNA (5'-D(P*T)-R(P*GP*AP*GP*G)-D(P*T)-R(P*AP*G)-3') d 18 NA TGAGGTAGTAGGTTGTAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-09-03
Deposition Author(s): Li, S. , Zhang, K. , Zhao, X.