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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9WFD

Cryo-em structure of the type ii secretion system protein from acidithiobacillus caldus

PDB DOI: 10.2210/pdb9wfd/pdb

Classification: TOXIN
Organism(s): Acidithiobacillus Caldus (Strain Sm-1)

Deposited: 2025-08-21
Deposition Author(s): Bao, Z.P. , Dai, X. , Feng, Q.S. , Fu, Y. , Li, W. , Li, Y. , Lin, W.F. , Liu, R.H. , Zhang, K. , Zhang, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.39 Å

9wfd
Literature

Cryo-em structure of the type ii secretion system protein from acidithiobacillus caldus

Bao, Z.P. , Dai, X. , Feng, Q.S. , Fu, Y. , Li, W. , Li, Y. , Lin, W.F. , Liu, R.H. , Zhang, K. , Zhang, X.

Primary Citation of Related Structures: 9WFD


Proteins
Molecule Chains Sequence Length Organism Sequence
Type II and III secretion system protein A 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein B 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein C 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein D 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein E 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein F 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein G 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein H 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein I 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein J 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein K 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein L 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein M 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Type II and III secretion system protein N 502 Acidithiobacillus Caldus (Strain Sm-1) MKLRGKILPLFVAIAMAIPAQAAEDRTIDLYAGQVRVIPTKPVKRVAIGDGKVLSTTVVDGNELLLLGDAEGETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNLAPTTLARVRALQALYPKTIVLATPSPFDMEKMVWLDVNILEIRKSVLENFGVDWSKQIPGPFAAFGKDFVGPRNVATIPLGQDLTQPPVAGTGVRVTPPLGSLNGAIDLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPILQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVPGFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTDLVILVTPRVVSAASLENIRQVSQAVEMKDEYRNTLPKGSTTRDAVDRTLGSKTPYPETQAVPAPKPSLPLVVTQPPAAMPSDKE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-08-21
Deposition Author(s): Bao, Z.P. , Dai, X. , Feng, Q.S. , Fu, Y. , Li, W. , Li, Y. , Lin, W.F. , Liu, R.H. , Zhang, K. , Zhang, X.