9WCY
Cryo-em structure of the mycobacterium abscessus cytochrome bcc:aa3 supercomplex in the presence of nd-011458
PDB DOI: 10.2210/pdb9wcy/pdb
Classification: OXIDOREDUCTASE Organism(s): Mycobacteroides Abscessus
Deposited: 2025-08-18 Deposition Author(s): Gruber, G. , Mathiyazakan, V.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.26 Å
Cryo-em structure of the mycobacterium abscessus cytochrome bcc:aa3 supercomplex in the presence of nd-011458
Primary Citation of Related Structures: 9WCY
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Probable cytochrome c oxidase subunit 3 | G | 206 | Mycobacteroides Abscessus | MTTAAAPGSPAGTAITQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFTARAQSGGNWPPEPTELNLGLAIPVTAVLVASSFTCQMGVFAAERGDVFGLRRWYVITLIMGTFFVLGQGYEYMNLVHEGTTIAGSAYGSTFYLATGFHGLHVIGGLVAFVYLLIRTRMSKFTPAQATSAIVVSYYWHFVDIVWIALFATIYFVR |
| Prokaryotic respiratory supercomplex associate factor 1 | B | 99 | Mycobacteroides Abscessus | MACSRRLRFGGLAVATTEVVKYDGVDVEDVPSVAFGRGLSGQNPRVFHVLGVVMAAILLLMLIGNHVGKVEDIFLVGFAAIVLAFTANDYFGRRSGRIR |
| DUF5130 domain-containing protein | K | 175 | Mycobacteroides Abscessus | MTRMGTATATPAPRRLEGPQVASGDVAVKPAGDLPRGWAETVSGRLSGVTEPGELSVHYPFPNYQLATLDDALTYGSRQSKARFSVYIGDLGNDTNAGAREVFLKVPTPDEAVLIAVSPDQHVVEVVYGEALKGRGAESAADLGVAAALAAFKEGNLLDGIISAVRVMSAAIARP |
| Cytochrome c oxidase subunit 1 | L | 564 | Mycobacteroides Abscessus | MTAEAPPIGGLQASRPFPPRMGARGTLIYRLITTTDHKLIGIMYLVACFAFFLIGGLMALFMRAELAVPGLQFLSNEQFNQLFTMHGTVMLLFYATPIVFGFANVVLPLQIGAPDVAFPRLNAFSFWLFLFGALIGIAGFITPGGAADFGWTAYTPLTDAIHSPGAGADLWIMGLAVGGLGTILGAVNMITTVVCMRAPGMTMFRMPIFTWNILVTSVLVLLAFPLLTAALFGLAADRHLGAHVFDPANGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEIFPVFSRKPIFGYTTLIYATLGIAALSIAVWAHHMYATGAVLLPFFSFMTFLIAVPTGIKFFNWIGTMWKGQLTFETPMIFSVGFLVTFLFGGLTGVLLAMPPVDFHVTDSYFVIAHFHYVLFGTIVFATYAGIYFWFPKMTGRLLDERLGKFHFWLTFIGFHSTFLVQHWLGNQGMPRRYADYLPTDGFTFLNSFSTVGAFILGASTLPFLWNVFKSYRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFSELPRIRSERPAFELHYPHMSERMRAEAHVGGGH |
| Cytochrome c oxidase polypeptide 4 | M | 139 | Mycobacteroides Abscessus | MHIEARLFEILTGFFALATVVYAVLTAMYANGGVEWAGTTAMVMTTGLSLIISTFFRFVARRLDTRPEDYEDAEIADGAGELGFYSPHSWWPIMIALAAATTAVGVALWLPWLLAAGAVFVLSAVAGLVFEYHIGAEKH |
| Cytochrome c oxidase polypeptide 4 | N | 139 | Mycobacteroides Abscessus | MHIEARLFEILTGFFALATVVYAVLTAMYANGGVEWAGTTAMVMTTGLSLIISTFFRFVARRLDTRPEDYEDAEIADGAGELGFYSPHSWWPIMIALAAATTAVGVALWLPWLLAAGAVFVLSAVAGLVFEYHIGAEKH |
| Lipoprotein lpqE | Q | 227 | Mycobacteroides Abscessus | MFRTRSRRSTTRVTTLLGAAVLATALTGCGAGQISQTANQSSAINGGSANLGKLALRNIHLVGNSDPVKQRAGQKAELVLVIANESADISDKLTSITSPDEIGKVTLSGDSDIPATGRLFVGSAEGQEPPAEAKAPETAAPEAGSTEITTAVTPAPEAKPQASSDPAIKHGKAQLTLTKDLADGLTYRFTFTFEKAGEVTVAVPIDAGPNAPRQHTIDGGGHEGGEH |
| Lipoprotein lpqE | R | 227 | Mycobacteroides Abscessus | MFRTRSRRSTTRVTTLLGAAVLATALTGCGAGQISQTANQSSAINGGSANLGKLALRNIHLVGNSDPVKQRAGQKAELVLVIANESADISDKLTSITSPDEIGKVTLSGDSDIPATGRLFVGSAEGQEPPAEAKAPETAAPEAGSTEITTAVTPAPEAKPQASSDPAIKHGKAQLTLTKDLADGLTYRFTFTFEKAGEVTVAVPIDAGPNAPRQHTIDGGGHEGGEH |
| Cytochrome bc1 complex cytochrome b subunit | I | 546 | Mycobacteroides Abscessus | MSDTAQKPSRAAKQAEAMDSRYHLAAGMKRQINKVFPTHWSFMLGEIALYSFIVLLLSGVYLTLFFDPSMSEVTYNGIYQPLRGVQMSKAYETTLNISFEVRGGLFVRQIHHWAALMFAASIMVHMARIFFTGAFRRPREANWVIGALLFILAMFEGFFGYSLPDDLLSGTGIRAALSGITMGLPLIGTWMHWALFGGDFPGNILIPRLYAMHILLIPAIILALIGIHLALVWYQKHTQFPGPGATEKNVVGVRILPVFALKGGSFFAFTTAILALMSGLLQINPIWVLGPYKPSQISAGSQPDFYMMWTDGLLRIIPAWEIYPFGHTIPQAVWVAVGMGLVFGLLIAYPFLEKKLTGDDAHHNLLQRPRDAPVRTAIGSAAISLYMLFTLMCMNDIIALKFHISLNATTWIGRIGMVILPAVVYYIAYRWAIGLQRSDRAVLEHGIETGIIKRLPHGEYIEIHQPLAGVDEHGHAIPLEYQGAPVPQRMNKLGSAGAPGTGSFLFADPADEQHALAEAEHEAHHKSLLALKEYQDGEPSTNGHGH |
| Cytochrome bc1 complex cytochrome b subunit | J | 546 | Mycobacteroides Abscessus | MSDTAQKPSRAAKQAEAMDSRYHLAAGMKRQINKVFPTHWSFMLGEIALYSFIVLLLSGVYLTLFFDPSMSEVTYNGIYQPLRGVQMSKAYETTLNISFEVRGGLFVRQIHHWAALMFAASIMVHMARIFFTGAFRRPREANWVIGALLFILAMFEGFFGYSLPDDLLSGTGIRAALSGITMGLPLIGTWMHWALFGGDFPGNILIPRLYAMHILLIPAIILALIGIHLALVWYQKHTQFPGPGATEKNVVGVRILPVFALKGGSFFAFTTAILALMSGLLQINPIWVLGPYKPSQISAGSQPDFYMMWTDGLLRIIPAWEIYPFGHTIPQAVWVAVGMGLVFGLLIAYPFLEKKLTGDDAHHNLLQRPRDAPVRTAIGSAAISLYMLFTLMCMNDIIALKFHISLNATTWIGRIGMVILPAVVYYIAYRWAIGLQRSDRAVLEHGIETGIIKRLPHGEYIEIHQPLAGVDEHGHAIPLEYQGAPVPQRMNKLGSAGAPGTGSFLFADPADEQHALAEAEHEAHHKSLLALKEYQDGEPSTNGHGH |
| Cytochrome c oxidase subunit CtaJ | H | 86 | Mycobacteroides Abscessus | MSFLNSPTYIGMPVWVALITPVAFVLIGLWTMRKKGPHPATYNMNDGWTHGPILWAAVDENIGDAHGHGHGHAGAEAIGGSASGKW |
| Cytochrome bc1 complex cytochrome c subunit | U | 295 | Mycobacteroides Abscessus | MPDGPKTQPSPVKGAQQVSVEPVKDTAAKNRARRKFRRRVSAGLLLLIALVVAGGLASTFTPTPQVAVADEDKSALLRTGKQLYETSCITCHGANLQGVPDRGPSLIGVGEAAVYFQVSTGRMPAMRNEAQAQRKDPIFDEEQTDALGAYIQANGGGPQVIRDRDGAVAQESLRGNNIARGGDLFRLNCASCHNFTGRGGALSSGKFAPELDPATEQQIYTAMLTGPQNMPKFSDRQLTVDEKKDIIAYVRASSETPDPGGYGLGGFGPTSEGMAMWIIGIVAAIAAALWIGARA |
| Cytochrome bc1 complex cytochrome c subunit | O | 295 | Mycobacteroides Abscessus | MPDGPKTQPSPVKGAQQVSVEPVKDTAAKNRARRKFRRRVSAGLLLLIALVVAGGLASTFTPTPQVAVADEDKSALLRTGKQLYETSCITCHGANLQGVPDRGPSLIGVGEAAVYFQVSTGRMPAMRNEAQAQRKDPIFDEEQTDALGAYIQANGGGPQVIRDRDGAVAQESLRGNNIARGGDLFRLNCASCHNFTGRGGALSSGKFAPELDPATEQQIYTAMLTGPQNMPKFSDRQLTVDEKKDIIAYVRASSETPDPGGYGLGGFGPTSEGMAMWIIGIVAAIAAALWIGARA |
| Cytochrome bc1 complex Rieske iron-sulfur subunit | V | 391 | Mycobacteroides Abscessus | MSVSDADKPEIPSDEQLAAMSRDELVKLGTNLDGVEIVYREPRWPVEGTKAEKRAERLVALWFALGGVFGLALLGVFLFWPWEYKPFGDPGNALYNLATPLYGLTLGLSVLSLGIGAVLYTKKFIPQEISIQDRHDGPGSAEVDRKTIVAQLQDTLDTSTLPRRKMIVRALGFGVGAMGAGTAVAFIGGMIKNPWARVVPTANGKQPVLLTSGWTPRYHGETIYLGRAVGSSSNVLLKIRPEDIDAGGMETVFPWRESDGDGTTVESHEKLSHIQMGIRNPVMLIRVRPTDMPKVVKRKGQENFNYGDLFAYTKICSHLGCPTSLFEQQTYRILCPCHQSQFDALHFAKPIFGPAARALAQLPLTVDKDGYLVANGDFVEPVGPAFWERKS |
| Cytochrome bc1 complex Rieske iron-sulfur subunit | P | 391 | Mycobacteroides Abscessus | MSVSDADKPEIPSDEQLAAMSRDELVKLGTNLDGVEIVYREPRWPVEGTKAEKRAERLVALWFALGGVFGLALLGVFLFWPWEYKPFGDPGNALYNLATPLYGLTLGLSVLSLGIGAVLYTKKFIPQEISIQDRHDGPGSAEVDRKTIVAQLQDTLDTSTLPRRKMIVRALGFGVGAMGAGTAVAFIGGMIKNPWARVVPTANGKQPVLLTSGWTPRYHGETIYLGRAVGSSSNVLLKIRPEDIDAGGMETVFPWRESDGDGTTVESHEKLSHIQMGIRNPVMLIRVRPTDMPKVVKRKGQENFNYGDLFAYTKICSHLGCPTSLFEQQTYRILCPCHQSQFDALHFAKPIFGPAARALAQLPLTVDKDGYLVANGDFVEPVGPAFWERKS |
| Superoxide dismutase [Cu-Zn] | X | 238 | Mycobacteroides Abscessus | MKPMVKPAVLASGTLAAVALSLSGCSPDQQASTTPGTTPPVWTGSTAPATAGEHGGHGGGEQPVPAGEKLNATLKLADGTPVATAAFVFQDGYARITVKTTQNGKLTPGFHGLHIHSFKKCEANSVAPAGGAPGDFLSAGGHFNVPGYTGHPSSGDLVSLNILKDGSGELVTTADSFTKEDLLAGNGTAIIIHEKSDNFANIPAERYTQANGASGPDDTTKSTGDAGKRVACGLIDAG |
| Superoxide dismutase [Cu-Zn] | A | 238 | Mycobacteroides Abscessus | MKPMVKPAVLASGTLAAVALSLSGCSPDQQASTTPGTTPPVWTGSTAPATAGEHGGHGGGEQPVPAGEKLNATLKLADGTPVATAAFVFQDGYARITVKTTQNGKLTPGFHGLHIHSFKKCEANSVAPAGGAPGDFLSAGGHFNVPGYTGHPSSGDLVSLNILKDGSGELVTTADSFTKEDLLAGNGTAIIIHEKSDNFANIPAERYTQANGASGPDDTTKSTGDAGKRVACGLIDAG |
| cytochrome-c oxidase | D | 349 | Mycobacteroides Abscessus | MTSRSGSRPSLLATVVLLGAASFLLSGCSVQEVLRFGWPEGITPEAHDYMAPLWTWAVVASLVVGVIVWGLTFWTVAFHRHKPGDTEFPRQFGYNLPLELVLTVVPFLIIAVLFYFTVVVQNKVMHKDPNPEVVVDVTAFQWNWKFGYQKVAFKDGSLNYEGADPERKKAMTSKPEGKDAHGNELVGPVRGLNREDRTYLNFDKIETVGTSSEIPVLVVPSGKSIEFQLASADVIHSFRVVPFLFTRDVMPEPKANNSDNVFQVSKILKEGAFVGRCVEMCGTYHSMMAFELRVVSPNDFKFYLKARQDGKSNAEALASIGQSPVSITTRPFDGRRGDLAPVDNNAAKN |
| cytochrome-c oxidase | E | 349 | Mycobacteroides Abscessus | MTSRSGSRPSLLATVVLLGAASFLLSGCSVQEVLRFGWPEGITPEAHDYMAPLWTWAVVASLVVGVIVWGLTFWTVAFHRHKPGDTEFPRQFGYNLPLELVLTVVPFLIIAVLFYFTVVVQNKVMHKDPNPEVVVDVTAFQWNWKFGYQKVAFKDGSLNYEGADPERKKAMTSKPEGKDAHGNELVGPVRGLNREDRTYLNFDKIETVGTSSEIPVLVVPSGKSIEFQLASADVIHSFRVVPFLFTRDVMPEPKANNSDNVFQVSKILKEGAFVGRCVEMCGTYHSMMAFELRVVSPNDFKFYLKARQDGKSNAEALASIGQSPVSITTRPFDGRRGDLAPVDNNAAKN |
| Probable cytochrome c oxidase subunit 3 | F | 206 | Mycobacteroides Abscessus | MTTAAAPGSPAGTAITQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFTARAQSGGNWPPEPTELNLGLAIPVTAVLVASSFTCQMGVFAAERGDVFGLRRWYVITLIMGTFFVLGQGYEYMNLVHEGTTIAGSAYGSTFYLATGFHGLHVIGGLVAFVYLLIRTRMSKFTPAQATSAIVVSYYWHFVDIVWIALFATIYFVR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-08-18 Deposition Author(s): Gruber, G. , Mathiyazakan, V.