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FASTA Sequence PDB Format mmCIF Format
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9W9F

Cryo-em structure of aspergillus fumigatus erds dimer with trna(asp) acceptor stem docked at the asprs active site

PDB DOI: 10.2210/pdb9w9f/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Aspergillus Fumigatus (Strain Atcc Mya-4609 / Cbs 101355 / Fgsc A1100 / Af293) , Synthetic Construct

Deposited: 2025-08-09
Deposition Author(s): Itoh, Y. , Kise, Y. , Murayama, H. , Nishimura, M. , Nureki, O.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.66 Å

9w9f
Literature

Cryo-em structure of aspergillus fumigatus erds dimer with trna(asp) acceptor stem docked at the asprs active site

Itoh, Y. , Kise, Y. , Murayama, H. , Nishimura, M. , Nureki, O.

Primary Citation of Related Structures: 9W9F


Proteins
Molecule Chains Sequence Length Organism Sequence
Aspartate--tRNA ligase, cytoplasmic A 947 Aspergillus Fumigatus (Strain Atcc Mya-4609 / Cbs 101355 / Fgsc A1100 / Af293) , Synthetic Construct MSIKRALSKIRPKADDDSSKSNLSNGSSPRRSIFSSFLRDRDYVSSSDDGSDDSGSGSLSRNQQKRLAREQRRKQRSRLSEEQQSDDSERRHKEEIAQAAREETAEMKARYGELPLLQSTSRPREPRIRLEDISSSSVGQEVFFTARLHIIRRMSARLVFLVFRQRLTTFQGVLHEKPGAKSIAMVQWAEHLRLGSIVRVRGIVQTPQVPVLGCSIHDVELDVEQIHLVVHREEPVPFSVYEAEIRTAEEDKVEGRRSHLPDRTRLNNRILDLRTPTSQSIFRLQSALCNIFRSSLDEQGFIEIHTPKLQGSATESGASVFQVNYFGRDAFLAQSPQLAKQMAIAADFERVYEIGAVFRAENSNTHRHLTEYTGLDIEMAIEEHYHEMLDVLDAVIKNMLKGVYGRYRREIEIVKHQFPSEDVVWLEETPIIRFSDGIKMLNESGWRDEDGNPLPEDDDLHTRDEIRLGELVKEKYGTDYYILDKFPVAARPFYAMPDPEDPRFTNSFDIFIRGQEIVSGGQRIHDPRMLEESMRRSGINPDTMEDYLEGFRWGAPPHAGAGVGLERLLMLLLKLGNIRLASLFHRDPKSFPPKPPALLLRHPESSTIEPPWQREGRGSLAKDESELQPLEHLIANYGDATSTSWGDERFKIWRDMATGAAVSYVPSSNNYAVIPGNPLCDPSQYNRIITQFLQWMRRETKYKPIWLLCSPEVESILGDKLGWRSLSCIAEERVDPSRNQAASDGEIARKIRRAENEGIKIVEMKYGEMVPDDVREKIDARIQDWLANRKGTQVHLSEIHPWRDSEHRWYFYAVDKSGTICAFVALAMLSPHFGMQVKYSFDFPGSPNGVIEYIVTHAIQTAARAGTKSLTFGAGATATLTPGHNLHGAKIKMLQHTYETLAKQFHLVRKSEFRAKLGAHEEPLYIAYPPHGLGSRGIRAVLHFFED
Aspartate--tRNA ligase, cytoplasmic B 947 Aspergillus Fumigatus (Strain Atcc Mya-4609 / Cbs 101355 / Fgsc A1100 / Af293) , Synthetic Construct MSIKRALSKIRPKADDDSSKSNLSNGSSPRRSIFSSFLRDRDYVSSSDDGSDDSGSGSLSRNQQKRLAREQRRKQRSRLSEEQQSDDSERRHKEEIAQAAREETAEMKARYGELPLLQSTSRPREPRIRLEDISSSSVGQEVFFTARLHIIRRMSARLVFLVFRQRLTTFQGVLHEKPGAKSIAMVQWAEHLRLGSIVRVRGIVQTPQVPVLGCSIHDVELDVEQIHLVVHREEPVPFSVYEAEIRTAEEDKVEGRRSHLPDRTRLNNRILDLRTPTSQSIFRLQSALCNIFRSSLDEQGFIEIHTPKLQGSATESGASVFQVNYFGRDAFLAQSPQLAKQMAIAADFERVYEIGAVFRAENSNTHRHLTEYTGLDIEMAIEEHYHEMLDVLDAVIKNMLKGVYGRYRREIEIVKHQFPSEDVVWLEETPIIRFSDGIKMLNESGWRDEDGNPLPEDDDLHTRDEIRLGELVKEKYGTDYYILDKFPVAARPFYAMPDPEDPRFTNSFDIFIRGQEIVSGGQRIHDPRMLEESMRRSGINPDTMEDYLEGFRWGAPPHAGAGVGLERLLMLLLKLGNIRLASLFHRDPKSFPPKPPALLLRHPESSTIEPPWQREGRGSLAKDESELQPLEHLIANYGDATSTSWGDERFKIWRDMATGAAVSYVPSSNNYAVIPGNPLCDPSQYNRIITQFLQWMRRETKYKPIWLLCSPEVESILGDKLGWRSLSCIAEERVDPSRNQAASDGEIARKIRRAENEGIKIVEMKYGEMVPDDVREKIDARIQDWLANRKGTQVHLSEIHPWRDSEHRWYFYAVDKSGTICAFVALAMLSPHFGMQVKYSFDFPGSPNGVIEYIVTHAIQTAARAGTKSLTFGAGATATLTPGHNLHGAKIKMLQHTYETLAKQFHLVRKSEFRAKLGAHEEPLYIAYPPHGLGSRGIRAVLHFFED

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
tRNA(Asp) r 75 NA UCCUCGAUGGUCUAACGGUCAUGAUUUCCGCUUGUCACGCGGGAGACCAGGGUUCGACUCCCUGUCGGGGAGCCA
tRNA(Asp) s 75 NA UCCUCGAUGGUCUAACGGUCAUGAUUUCCGCUUGUCACGCGGGAGACCAGGGUUCGACUCCCUGUCGGGGAGCCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-08-09
Deposition Author(s): Itoh, Y. , Kise, Y. , Murayama, H. , Nishimura, M. , Nureki, O.