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9VWJ

The cryo-em structure of chum salmon (oncorhynchus keta) 24-mer rhamnose-binding lectin csl2 bound with gb3

PDB DOI: 10.2210/pdb9vwj/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Oncorhynchus Keta

Deposited: 2025-07-17
Deposition Author(s): Goto, K. , Ogawa, T. , Tanaka, Y. , Tsugita, A. , Wang, Z. , Yokoyama, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 1.89 Å

Literature

The cryo-em structure of chum salmon (oncorhynchus keta) 24-mer rhamnose-binding lectin csl2 bound with gb3

Goto, K. , Ogawa, T. , Tanaka, Y. , Tsugita, A. , Wang, Z. , Yokoyama, T.

Primary Citation of Related Structures: 9VWJ


Proteins
Molecule Chains Sequence Length Organism Sequence
L-rhamnose-binding lectin CSL2 A 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 B 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 C 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 D 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 E 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 F 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 G 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 H 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 I 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 J 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 K 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 L 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 M 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 N 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 O 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 P 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 Q 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 R 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 S 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 T 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 U 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 V 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 W 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
L-rhamnose-binding lectin CSL2 X 195 Oncorhynchus Keta TRVVTCDNGENVQFLICDSGVIFIERALYGRTDGTTCKEGRPANQLTNTQCSQTGTLEVLSHRCNGKQVCEVNTEVFRTSDPCVGIYKYLETTYTCLPATRSITCEGSDALLECDEGTIQIHSANYGRRDQLVCSFNRPANQLANTNCLSQSITTSKVAERCNRKSQCDVPASNSLYGDPCVGTYKYLDVAYTCG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-07-17
Deposition Author(s): Goto, K. , Ogawa, T. , Tanaka, Y. , Tsugita, A. , Wang, Z. , Yokoyama, T.