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FASTA Sequence PDB Format mmCIF Format
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9VTJ

Cryoem structure of tobacco mosaic virus trna-like structure complexed with tobacco 60s and cycloheximide (chx)

PDB DOI: 10.2210/pdb9vtj/pdb

Classification: RIBOSOME
Organism(s): Nicotiana Benthamiana , Synthetic Construct

Deposited: 2025-07-10
Deposition Author(s): Lin, J. , Lu, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.5 Å

9vtj
Literature

Cryoem structure of tobacco mosaic virus trna-like structure complexed with tobacco 60s and cycloheximide (chx)

Lin, J. , Lu, G.

Primary Citation of Related Structures: 9VTJ


Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein L24 LA 164 Nicotiana Benthamiana , Synthetic Construct MVLKTELCRFSGGKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTERPEVRDAAREAALREIKERIKKTKDEKKAKKAEVQAKSQKAGGKGNMPKGAGGKGPKLGGGGGKR
60S ribosomal protein L36 LJ 110 Nicotiana Benthamiana , Synthetic Construct MAPKQPNTGLSVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGGEKKK
Ribosomal protein L37 LK 95 Nicotiana Benthamiana , Synthetic Construct MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCSACAYPAARLRKYNWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTEATPRKKGAAVAS
60S ribosomal protein L38 LL 69 Nicotiana Benthamiana , Synthetic Construct MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL
60S ribosomal protein L39-3 LM 51 Nicotiana Benthamiana , Synthetic Construct MPSHKTFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Ubiquitin-60S ribosomal protein L40 LN 128 Nicotiana Benthamiana , Synthetic Construct MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
60S ribosomal protein L35-like LO 123 Nicotiana Benthamiana , Synthetic Construct MARIKVHELRNKTKTELLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKTALREAYKNKKYLPLDLRPKKTRAIRKRLTKHQASLKTEREKKKEMYFPIRKYAIKV
60S ribosomal protein L44 LP 105 Nicotiana Benthamiana , Synthetic Construct MVNVPKTKKTYCKSKEGKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
60S ribosomal protein L37a LQ 77 Nicotiana Benthamiana , Synthetic Construct MTKRTKKTGIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYAVKRKAVGIWGCKYCGNVKVGGAYTLNTASDV
60S ribosomal protein L7a LR 237 Nicotiana Benthamiana , Synthetic Construct NPLFEKRPKQFGIGGALPPKKDLTRFVKWPQVVRIQRKRRILKQRLKVPPALNQFSKTLDKNLATNLFKMLLKYRPEDKAAKKERLIKKAQAEAEGKTPETKKPIIVKYGLKHITYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASALCLTTVKNEDKMEFSRILEAIKANFNDKYEENRKKWGGGVMGSKSQARTKAKERVLAKEAAQRMN
60S ribosomal protein L13 LS 200 Nicotiana Benthamiana , Synthetic Construct MKHNNVIPNGHFKKHWQNYVRTWFNQPARKTRRRAARQQKAVKIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVIFPRRAKKVKAGDSSVEELATATQVQGSYMPITREQPAVELVKVTDEMKSFNAYGKLRIERTNARHIGARLKRAAEA
60S ribosomal protein L27 LB 135 Nicotiana Benthamiana , Synthetic Construct MVKFLKPNKAVIILQGKYAGRKAVIIRAFDEGTRDRPYGHCLVAGISKYPKKVIRKDSAKKQAKKSRVKAFIKLVNYNHIMPTRYTLDVDLKDVVNVDVLQSRDKKVTAAKEAKARLEERFKTGKNRWFFTKLRF
60S ribosomal protein L14-1 LT 130 Nicotiana Benthamiana , Synthetic Construct MPFKRFVEIGRVALVNYGKDYGKLVVIVDVIDQNRALVDAPDMVRSQINFKRLSLTDIKIDIKRIPKKKTLVAAMEAADVKTKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKRAGVVRQELAKLKK
Ribosomal protein L15 LU 204 Nicotiana Benthamiana , Synthetic Construct MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLAGLKVLNSYWINEDSTYKYFEVILVDAAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHLYHKNRPSRRGTWKRNQTLSLRRYR
60S ribosomal protein L18-2 LV 187 Nicotiana Benthamiana , Synthetic Construct MGIDLKAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKPPLSLSRLISYAKGKEDKVVVIVGTITDDVRAYEVPALKVCALRFTKTARARIEKAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVKHFGPAPGVPHSHTKPFVRSKGRKFERARGRRNSRGYKA
Ribosomal protein L19 LW 211 Nicotiana Benthamiana , Synthetic Construct MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMENIHKTKAEKAREKTLSDQFEARRAKNKASRERKFARREERLAQGPGERPVQPAASATPAQTAQGGSKKSKK
60S ribosomal protein L18a LX 178 Nicotiana Benthamiana , Synthetic Construct MVTYKFHQYQVVGRALPTENDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRHHCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATRPNLFM
60S ribosomal protein L21-1-like LY 164 Nicotiana Benthamiana , Synthetic Construct MPAGHGLRSRTRDSFSRAFRKKGTIPLSTYLRIFKIGDYVDIKVNGAIHKGMPHKFYHGRTGRVWNVTKRAVGVEVNKQVRNKILRKRIHVRIEHVQLSRCTEEVKERMKKNDQLKAEAKARGEVISTKRQPVGPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Large ribosomal subunit protein eL22 LZ 108 Nicotiana Benthamiana , Synthetic Construct TFVIDCSKPVEDKIMEIASLEKFLQERIKVGGKAGALGDSVAVARDKTKITVTSDTTFSKRYLKYLTKKYLKKNNVRDWLRVISSNKDRNVYELRYFNIAENEAEEED
60S ribosomal protein L3 LC 389 Nicotiana Benthamiana , Synthetic Construct MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCKLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVIVGVVGYVKTPRGLRCLNTVWAQHLSEELKRRFYKNWCKSKKKAFLKYSKKYETDEGKKDIQTQLEKLKKYACVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYSFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKLGKAGQESHAAITDFDRTEKEITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLLNQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKEKFYGRLKA
60S ribosomal protein L4-like LD 405 Nicotiana Benthamiana , Synthetic Construct MATAAAIPTTTVQSFENDMATDGAVPVPAVMKAPIRPDVVTYVHSNISKNARQPYAVSKKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKIPVNQKRYAVASAIAASAVPSLVLARGHRIESVPELPLVVSDSVESIEKTSNAVKALKQIGAYPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEICHVDRLNLLKLAPGGHLGRFIVWTKSAYEKLDEIYGSFDKASEKKKGYVLPRPKMVNADLARIINSDEVQSVVRPIKKDVNKRATLKKNPLKNLNVLLKLNPYAKTARRMSLLAEAQRVKAKKEKLDKKRHQVTKEEASAIRAAGTSWFKTMISDSDYTEFENFTKWLGVTQ
60S ribosomal protein L11-1 LE 181 Nicotiana Benthamiana , Synthetic Construct MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSSNIQ
60S ribosomal protein L9-1 LF 194 Nicotiana Benthamiana , Synthetic Construct MKTILSSETMDIPDGVKIKVKAKQIEVEGPRGKLTRNFKHLNLDFQLIKDEETGKKKLKIDAWFGSRKTTAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITGGNKAIEIRNFLGEKKVRKVDMLEGVTVVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGRIVEEE
60S ribosomal protein L13a-4 LG 206 Nicotiana Benthamiana , Synthetic Construct MVSGSGISARRVVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELENKRKERAQVAYERRKQLAKLRVKAEKAAEEKLGPQLAVIEPIKY
60S ribosomal protein L23 LH 140 Nicotiana Benthamiana , Synthetic Construct MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
60s ribosomal protein l27a-3 LI 148 Nicotiana Benthamiana , Synthetic Construct MTTRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPTINIDNLWSLVPQEVKDKAKSSSGTAPLIDVTQYGYFKVLGKGVLPENQAVVVKAKLISKNAEKKIKEAGGAVVLTA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (204-MER) 10 204 NA GGUAGUCAAGAUGCAUAAUAAAUAACGGAUUGUGUCCGUAAUCACACGUGGUGCGUACGAUAACGCAUAGUGUUUUUCCCUCCACUUAAAUCGAAGGGUUGUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAAGCGAGGGGUUCGAAUCCCCCCGUUACCCCCGGUAGGGGCCCA
5S rRNA 12 119 NA GGAUGCGAUCAUACCAGCACUAACGCACCGGAUCCCAUCAGAACUCCGAAGUUAAGCGUGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCCCCUGGGAAGUCCUCGUGUUGCAUCCC
5.8S rRNA 13 163 NA AAACGACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAAGCCAUUAGGCCGAGGGCACGUCUGCCUGGGCGUCACGC
25S rRNA 14 3390 NA GCGACCCCAGGUCAGGCGGGACUACCCGCUGAGUUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACUUACAAGGAUUCCCCUAGUAACGGCGAGCGAACCGGGAACAGCCCAGCCUUAGAAUCGGGCGGCUCCGUCGUCCGAAUUGUAGUCUGGAGAAGCGUCCUCAGCGGCGGACCGGGCCCAAGUCCCCUGGAAGGGGGCGCCAGAGAGGGUGAGAGCCCCGUUGUGCCCGGACCCUGUCGCACCACGAGGCGCUGUCUACGAGUCGGGUUGUUUGGGAAUGCAGCCCAAAUCGGGCGGUGAAUUCCGUCCAAGGCUAAAUACGGGCGAGAGACCGAUAGCGAACAAGUACCGCGAGGGAAAGAUGAAAAGGACUUUGAAAAGAGAGUCAAAGAGUGCUUGAAAUUGUCGGGAGGGAAGCGGAUGGGGGCCGGCGAUGCGCCCCGGUCGGAUGUGGAACGGUGUUGAGCCGGUCCGCCGAUCGACUCGGGGCGUGGACCAGCGUGGAUUGGGGGGGCGGCCAAAGCCCGGGCUUUUGAUACGCUCGUGGAACGUCGUCUCCUUGAUUGUGGUAGGCAGCGCGCGCCUCUGGCGUGCUUCGGCAUCUGCGCGCUCCGGACGCUGGCCUGUGGGCUCCCCAUUCGACCCGUCUUGAAACACGGACCAAGGAGUCUGACAUGUGUGCGAGUCAACGGGCGAGUAAACCCGUAAGGCGUAAGGAAGCUGAUUGGUGGGAUCCCCCUGAGGGGUGCACCGCCGACCGACCUUGAUCUUCUGUGAAGGGUUCGAGUGUGAGCAUACCUGUCGGGACCCGAAAGAUGGUGAACUAUGCCUGAGCGGGGCGAAGCCAGAGGAAACUCUGGUGGAGGCCCGCAGCGAUACUGACGUGCAAAUCGUUCGUCUGACUUGGGUAUAGGGGCGAAAGACUAAUCGAACCGUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGAGCUCGCGUGCGAGUUCUAUCGGGUAAAGCCAAUGAUUAGAGGCAUCGGGGGCGCAACGCCCUCGACCUAUUCUCAAACUUUAAAUAGGUAGGACGGCGCGGCUGCUUUGUUGAGCCGCGCCACGGAAUCAAGAGCUCCAAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGGAAGCCGGGUUACGGUGCCAAACUGCGCGCUAACCUAGAUCCCACAAAGGGUGUUGGUCGAUUAAGACAGCAGGACGGUGGUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCCGAAAAUGGAUGGCGCUUAAGCGCGCGACCUACACCCGGCCGUCGGGGCAAGUGCCAGGCCCCGAUGAGUAGGAGGGCGCGGCGGUCGCUGCAAAACCUUGGGCGUGAGCCUGGGCGGAGCGGCCGUCGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGGCCGAAGAGGGGAAAGGUUCCAUGUGAACGGCACUUGCACAUGGGUUAGUCGAUCCUAAGGGUCGGGGGAACCCCGACAGAUAGCGCGUUUCGCGCGUACUCCGAAAGGGAAUCGGGUUAAAAUUCCUGAACCGGGACGUGGCGGUUGACGGCAACGUUAGGAAGUCCGGAGACGUCGGCGGGGGCCUCGGGAAGAGUUAUCUUUUCUGUUUAACAGCCUGCCCACCCUGGAAACGACUCAGUCGGAGGUAGGGUCCAGCGGCUGGAAGAGCACCGCACGUCGCGUGGUGUCCGGUGCGCCCCCGGCGGCCCUUGAAAAUCCGGAGGACCGAGUGCCGUCCACGCCCGGUCGUACUCAUAACCGCAUCAGGUCUCCAAGGUGAACAGCCUCUGGUCGAUGGAACAAUGUAGGCAAGGGAAGUCGGCAAAAUGGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUGAGGGCUGGGCACGGGGGUCCCAUUCCCGAACCCGUCGGCUGUCGGUGGACUGCUCGAGCUGCUCCCGCGGCGAGAGCGGGUCGCCGCGUGCCGGCCGGGGGACGGACUGGGAACGGUUCCUUCGGGGGCCUUCCCCGGGCGUCGAACAGCCAACUCAGAACUGGUACGGACAAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCCUGCGGAUGUUUACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCCGACUUUGUGAAAUGACUUGAGAGGUGUAGUAUAAGUGGGAGCCGAAAGGCGAAAGUGAAAUACCACUACUUUUAACGUUAUUUUACUUAUUCCGUGAAUCGGAAGCGGGGCACUGCCCCUCUUUUUGGACCCAAGGCUUGCUUGCAGGCCGAUCCGGGCGGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAAAGAUAACGCAGGUGUCCUAAGAUGAGCUCAACGAGAACAGAAAUCUCGUGUGGAACAGAAGGGUAAAAGCUCGUUUGAUUCUGAUUUCCAGUACGAAUACGAACCGUGAAAGCGUGGCCUAACGAUCCUUUAGACCUUCGGAAUUCGAAGCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGUGUUGGAUUGUUCACCCACCAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGACAGUGUCGCAAUAGUAAUUCAACCUAGUACGAGAGGAACCGUUGAUUCGCACAAUUGGUCAUCGCGCUUGGUUGAAAAGCCAGUGGCGCGAAGCUACCGUGCGCUGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCGGGCUAGAAGCGACGCAUGCGCCCGCCGUCCGCUUGCCGACCCGCAGUAGGGGCCUUUGGCCCCCAAGGGCACGUGUCGUUGGCUAAGUCAUCGCGGCGGAAGAGCCGCGGUGGCCGCCUUGAAGUACAAUUUCCAUCGAGCGGCGGGUAGAAUCCUUUGCAGACGACUUAAAUACGCGACGGGGUAUUGUAAGUGGCAGAGUGGCCUUGCUGCCACGAUCCACUGAGAUUCAGCCCUUUGUCGCUCCGAUUCGU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-07-10
Deposition Author(s): Lin, J. , Lu, G.