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9V66

Structure of the argonaute protein from verrucomicrobia bacterium in complex with guide dna

PDB DOI: 10.2210/pdb9v66/pdb

Classification: RNA BINDING PROTEIN/DNA
Organism(s): Verrucomicrobiota Bacterium

Deposited: 2025-05-26
Deposition Author(s): Wu, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.95 Å

Literature

Structure of the argonaute protein from verrucomicrobia bacterium in complex with guide dna

Wu, S.

Primary Citation of Related Structures: 9V66


Proteins
Molecule Chains Sequence Length Organism Sequence
VbAgo A 782 Verrucomicrobiota Bacterium MSEKQLGATLFPITGLPAQAFRLRVLRVRETIPMDTQTPVRLNRWATQLWKELKQAVVPTGRFEWPAFLTPDVESLTVGRVLTVQDVPDREYSIEVIGETVEVNPASASSEELQLAGEMIKRAISDAFGRNSDKYWRKHWNLYFRLEPENLQDRRDRVFAYRGLKFSVVFLGDKPWLAADILTTYHGQHALSEYSSEQRQRELHFHVSERIEADDRAMFLRDNGKIKIPCRFVGSTGKTVTQYTFPINGGQKNVREYYEQRYGIRVPENDEAVFVRDREGCDSWPVPASRLFPLFTTEYDEVRNCSVVPQMPPDERVETIRAFLNDLRDVSFAGSTLAIGHSHFQTAERSVFPAPALEFGNGQTLTVDASLPIEEGYNRYRQGKMTMLYEHGPFSSQSLPDLVLLYPDNLDRNAREKLRQRLGEEIKELCGVAPRIARQISYPLGKQPHAGAGLLAAADELVRNNDGTFLPVIVLADALREHIYDLLKRRLSSLASQCVRERTVARVARDEQAVGGSRLRNLALGILTAAGLQPWVLAKPLHYDFYMGVDLLANQVIYVFVCGKGGRNVWVQRGDQLRRRGITEKIDRVQLADQFKTGVREAKRLGVPLNSLVVHRDGRWWSNEDLAITEAVAELQGDGTLSKDCQVGVVEVRKSHLPVRLFSVLNATKGSLENPMPGSHLILNNTEAILTPTGQPGRWDKQGRTAGTLLLRITRNPNGSPLDIRKIAEDAYGLTHLNWNAPDIEISLPVTIRWSDERLREIVTNPSATDDTEVEPQETCIV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3') b 18 NA TGAGGTAGTAGGTTGTAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-26
Deposition Author(s): Wu, S.