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FASTA Sequence PDB Format mmCIF Format
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9V29

Cryo- em structure of small subunit (body) of 75s ribosome with a/p- & p/e- trnas from entamoeba histolytica bound to antibiotic paromomycin

PDB DOI: 10.2210/pdb9v29/pdb

Classification: RIBOSOME
Organism(s): Entamoeba Histolytica Hm-1:Imss

Deposited: 2025-05-19
Deposition Author(s): Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Literature

Cryo- em structure of small subunit (body) of 75s ribosome with a/p- & p/e- trnas from entamoeba histolytica bound to antibiotic paromomycin

Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.

Primary Citation of Related Structures: 9V29


Proteins
Molecule Chains Sequence Length Organism Sequence
Small ribosomal subunit protein uS2 SB 254 Entamoeba Histolytica Hm-1:Imss MSKNVKTNFPDILKPSAEDIKMMVACRVHIGATNLNFAMEEYVYERGNNNECIFNLMKTWEKLSLAARVIAGISNETPSDVVAVAGREMAHRASLKFMKYTGCTAVAGRFTPGSFTNQIQKKFMEPRLIIVSDPSVDHQALRESGYINVPTIAFCNSDNSLKNVDIAIPCNNRSRLSIGLMWWMLTREILRYQGKLARDEKWDVMVDLFLHRELDAKKDAPVIAGEEKVAKVEDKKAASDATVASTEWDDQKKN
40S ribosomal protein S4, putative SF 326 Entamoeba Histolytica Hm-1:Imss MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLVNLPLDKGIKKPLLQQVNETIKKNKMQKAGIQKASKKSKTTTEKKVTPKAAVEKKEEQVEKIYKKYPKKQAAPKKSKGNKKVVPGKKIGKK
40S ribosomal protein S6 SH 266 Entamoeba Histolytica Hm-1:Imss MKINVANPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGFPMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEIEGVTNDALPMRAGPKRASHIRKLFNLSQKDDVKKFVIRREVAKKHPKEGKSTKRSKAPKIQRLVTPRRLQHKAQKLEAKKLHKIAMLKEAKRYAAILNRYKVLKAHGMKVVSFADTDAVFKQNKAGSKKAASKGKKVGSKKTGKK
40S ribosomal protein S11, putative SM 156 Entamoeba Histolytica Hm-1:Imss MAEQTERAYQKQVFHHHSRNEKGEIDFGNVKRYHKQIGMGFVTPAEAIKGTYIDKKCPFTSDVSIRGRTLSGIVKSCHMKRTIIVRRDYFHYVSKYQRYEKRHKNIAVHCSPAFRQLKEGDHVVIGQCRPLSKTVRFNVLKFTSRGTGDKKQFAIF
40S ribosomal protein S13, putative SO 151 Entamoeba Histolytica Hm-1:Imss MGRMYNPGRGISRRCIPYRRSAPSWLKTSTLEVIDEMCKLAKKGIAPSQIGAIMRDTHGVGLVKSVTGSKVLRILKLAGLAPKIPEDLYFLMKRAVSVRKHLEKNKKDKDAKYHLILIESKIHRLTRYYKSAKVLEASFKYDANTASAIVS
Ribosomal protein S14, putative SP 146 Entamoeba Histolytica Hm-1:Imss MSKKVAAKSNVPEVIPGSTKDAFGVAHIYATFNDTFVHVTDISGKETIIRITGGMRVKADRDESSPYAAMTAAQDVAKRCKDLGVTSLHIKMRGEGGVYSKTPGPGAQAALRALARANMKIGRIEDVTPIPTDCTKRKGGRRGRRL
40S ribosomal protein S15a, putative SR 130 Entamoeba Histolytica Hm-1:Imss MVRVNVLADALKSITNAEKQGKRQVMIRPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLNGRLNKCAVISPRFNVTLSEFDKWEANLLPSRHFGALVLTTSYGILDNTEARAKHTGGRILGFFY
40S ribosomal protein S23, putative SY 141 Entamoeba Histolytica Hm-1:Imss MARGLHAARKMLAQRRANKWADKEWKKGKLVTRYKCNPLGTASHAKGLVQEKLGIETKQPNSGIRKCVRVRLLKNGKKITAFVPRDGSLNYVNENDEVLISGFGRRGHAVGDIPGVRFKVVCVAGVSLWGLWTNKKQKPHA
Small ribosomal subunit protein uS5 SC 255 Entamoeba Histolytica Hm-1:Imss MDAKQQRGEKRQFGNRRGGRGAPRGRGARKDGASDGWTPVTKLGRLVKDGKVKSIDQIFEFGIKIKEYQIVDHLLPGLKEEVMTMQSVQKQTSAGQRTRLKAYVAIGDHNGHAGLGVKCAKEVAEAIKGAMIQAKLAMVPVRRGYWGATIGEVHTVPCKLTGACGSVRVRLVPAPRGTGIVAAPTPKKFLILAGIEDVFTQTTGHTKTLGNFVKATYDAVRQSYGFQTKDLWKVGGVKQSPMDKYAKILAESKKN
Small ribosomal subunit protein eS1 SE 256 Entamoeba Histolytica Hm-1:Imss MATGKNKKYKAGNVKKGSKRKIAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKFGAYNYKFKCEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAASRELTQFVDYLRENKLPKEIVAKCSKVFSMDNVYIRKVKILKAGKIDSLKLLDQHQDTSAPVEAAPVAEEKGEVVEA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
A/P-tRNA si 76 NA GGCCCCAUAGCUCAGGGAUGAGAGCACGCGACUUUUAAUCGCGUGGUCGCAGGUUCAAGUCCUGCUGGGGCCACCA
P/E-tRNA sj 77 NA CUCUUCAUGGUGCAGCCCGUUAGCUCGUCGGGCUUUUAACCCGAAGGUCUUCGGUUCAAAUCCGGCCGAAGAAACCA
mRNA sk 10 NA UUGAAAAAAU
17S rRNA sa 1947 NA UAUCUGGUUGAUCCUGCCAGUAUUAUAUGCUGAUGUUAAAGAUUAAGCCAUGCAUGUGUAAGUAUAAAGACCAAGUAGGAUGAAACUGCGGACGGCUCAUUAUAACAGUAAUAGUUUCUUUGGUUAGUAAAAUACAAGGAUAGCUUUGUGAAUGAUAAAGAUAAUACUUGAGACGAUCCAGUUUGUAUUAGUACAAAAUGGCCAAUUCAUUCAAUGAAUUGAGAAAUGACAUUCUAAGUGAGUUAGGAUGCCACGACAAUUGUAGAACACACAGUGUUUAACAAGUAACCAAUGAGAAUUUCUGAUCUAUCAAUCAGUUGGUAGUAUCGAGGACUACCAAGAUUAUAACGGAUAACGAGGAAUUGGGGUUCGACAUCGGAGAGGGAGCUUUACAGAUGGCUACCACUUCUAAGGAAGGCAGCAGGCGCGUAAAUUACCCACUUUCGAAUUGAAGAGGUAGUGACGACACAUAACUCUAGAGUUGAGUAAAAUCAAUUCUUGAAGGAAUGAGUAGGAGGUAAAUUCUCCUACGAAAUCAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGUGUAUAUUAAAGUUGCUGUGAUUAAAACGCUCGUAGUUGAAUUAAAAUGUGGUUUUAUACAUUUUGAAGACUUUAUGUAAGUAAAGUUUCUAGAAAUGUUAAAUUAAAAUCAAAGAAGGAAACAAUUCAAGUAAUUGAGUUGUUAUUACUUUGAAUAAAAUAAGGUGUUUAAAGCAAAACAUUAUGUUAAUGAAUAUUCAAGCAUGGGACAAUGCUGAGGGGAUGUCAAUAAGACAUUUCGAGAGAAGGAUUAAAAGGAACAAUUGGGGUGAUUCAGAAAAUAACGGGAGAGGUGAAAAUCCAUGAUCGCUAUAAGAUGCACGAGAGCGAAAGCAUUUCACUCAACUGUGUCCAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGACGAUCAGAUACCGUCGUAGUCCUAACUAUAAACGAUGUCAACCAAGGAUUGGAUGAAAUUCAGAUGUACAAAGAUAGAGAAGCAUUGUUUCUAGAUCUGAGUAUAUCAAUAUUACCUUGUUCAGAACUUAAAGAGAAAUCUUGAGUUUAUGGACUUCAGGGGGAGUAUGGUCACAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAAACUUACCAAGACCGAACAGUAGAAGGAAUGACAGAUUAAGAGUUCUUUCAUGAUUUAUUGGGUAGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCAGGUUAAUUCCGGUAACGAACGAGACUGAAACCUAUUAAUUAGUUUUCUGCCUAUAAGACAGAAAUGUUCGCAAGAACAGGUGCGUAAGUACCACUUCUUAAAGGGACACAUUUCAAUUGUCCUAUUUUAAUUGUAGUUAUCUAAUUUCGGUUAGACCUCUUUUAACGUGGGAAAAAGAAAAAGGAAGCAUUCAGCAAUAACAGGUCUGUGAUGCCCUUAGACAUCUUGGGCCGCACGCGCGCUACAAUGGAGUUACUAGAGAGUAUUUUAUCAUUUACACCUUAUUUAUUAGGCUUUGUCUAAUAAUUAAGGAUAGUAAGUGGUGUACCGAGAUUGAAAUAGUUAAGGAAAACUCAAAAGAACGUACAUGACAGGGAUAAAUGAUUGGAAUUAUUUGUUUUGAACGAGGAAUUCCUUGUAAUAUCGAGUCAUUAACUCGAGAUGAAUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUCCUACCGAUUGAAUAAAGAGGUGAAAUUCUAGGAUUCUGUCUUAUAGAUAGAAAAAUGGAUUUAAAUCUCCUUAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-19
Deposition Author(s): Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.