9V1J
Cryo- em structure of small subunit (body) of 75s ribosome with p- trna from entamoeba histolytica
PDB DOI: 10.2210/pdb9v1j/pdb
Classification: RIBOSOME Organism(s): Entamoeba Histolytica Hm-1:Imss
Deposited: 2025-05-19 Deposition Author(s): Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.1 Å
Cryo- em structure of small subunit (body) of 75s ribosome with p- trna from entamoeba histolytica
Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.
Primary Citation of Related Structures: 9V1J
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Small ribosomal subunit protein uS2 | SB | 254 | Entamoeba Histolytica Hm-1:Imss | MSKNVKTNFPDILKPSAEDIKMMVACRVHIGATNLNFAMEEYVYERGNNNECIFNLMKTWEKLSLAARVIAGISNETPSDVVAVAGREMAHRASLKFMKYTGCTAVAGRFTPGSFTNQIQKKFMEPRLIIVSDPSVDHQALRESGYINVPTIAFCNSDNSLKNVDIAIPCNNRSRLSIGLMWWMLTREILRYQGKLARDEKWDVMVDLFLHRELDAKKDAPVIAGEEKVAKVEDKKAASDATVASTEWDDQKKN |
| 40S ribosomal protein S7 | SI | 201 | Entamoeba Histolytica Hm-1:Imss | MSGKMTAAKSAARAQVSTEVVVKKPGFDAYSKLVKEAVAGIPELKGVKVISAKKVTISKDKKATVIFIPLRMMRICRASFEKVIEALEKKLNGPVFIIGKRVVAHTKKVGQSGKTDYKPRSRTSKAVHEAYLNEMLYPVEVAGQRVHATLVHKKVANSKTVFVAVDDAKLKNSVKAKLPIYSAVYKNITGEKVKFAFPVVA |
| 40S ribosomal protein S8 | SJ | 237 | Entamoeba Histolytica Hm-1:Imss | MGITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLENGNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFYGKDIASTDYYKSLESATFKTEKKVVVPKEEENKEKTIAQQIAETQVALMNPSKTMQKKYAKKLEVLKNMKFDEALLEGFQSGRVLACISSRPGQTGSVEGYILEGKELDFYSKKISDKKK |
| 40S ribosomal protein S11, putative | SM | 156 | Entamoeba Histolytica Hm-1:Imss | MAEQTERAYQKQVFHHHSRNEKGEIDFGNVKRYHKQIGMGFVTPAEAIKGTYIDKKCPFTSDVSIRGRTLSGIVKSCHMKRTIIVRRDYFHYVSKYQRYEKRHKNIAVHCSPAFRQLKEGDHVVIGQCRPLSKTVRFNVLKFTSRGTGDKKQFAIF |
| 40S ribosomal protein S13, putative | SO | 151 | Entamoeba Histolytica Hm-1:Imss | MGRMYNPGRGISRRCIPYRRSAPSWLKTSTLEVIDEMCKLAKKGIAPSQIGAIMRDTHGVGLVKSVTGSKVLRILKLAGLAPKIPEDLYFLMKRAVSVRKHLEKNKKDKDAKYHLILIESKIHRLTRYYKSAKVLEASFKYDANTASAIVS |
| Ribosomal protein S14, putative | SP | 146 | Entamoeba Histolytica Hm-1:Imss | MSKKVAAKSNVPEVIPGSTKDAFGVAHIYATFNDTFVHVTDISGKETIIRITGGMRVKADRDESSPYAAMTAAQDVAKRCKDLGVTSLHIKMRGEGGVYSKTPGPGAQAALRALARANMKIGRIEDVTPIPTDCTKRKGGRRGRRL |
| 40S ribosomal protein S15a, putative | SR | 130 | Entamoeba Histolytica Hm-1:Imss | MVRVNVLADALKSITNAEKQGKRQVMIRPASKVICEFLNVMMKHQYITDYTVVDTHRSGKIVVNLNGRLNKCAVISPRFNVTLSEFDKWEANLLPSRHFGALVLTTSYGILDNTEARAKHTGGRILGFFY |
| 40S ribosomal protein S21 | SX | 86 | Entamoeba Histolytica Hm-1:Imss | MASNKKIELYIPRHCSVTHTLIAADDHAAVQILVPHVNENGVILPESTVYTVKGSVRKDGISDHSLNRQFQKDGFLKTVVPKNMMI |
| 40S ribosomal protein S23, putative | SY | 141 | Entamoeba Histolytica Hm-1:Imss | MARGLHAARKMLAQRRANKWADKEWKKGKLVTRYKCNPLGTASHAKGLVQEKLGIETKQPNSGIRKCVRVRLLKNGKKITAFVPRDGSLNYVNENDEVLISGFGRRGHAVGDIPGVRFKVVCVAGVSLWGLWTNKKQKPHA |
| Small ribosomal subunit protein uS5 | SC | 255 | Entamoeba Histolytica Hm-1:Imss | MDAKQQRGEKRQFGNRRGGRGAPRGRGARKDGASDGWTPVTKLGRLVKDGKVKSIDQIFEFGIKIKEYQIVDHLLPGLKEEVMTMQSVQKQTSAGQRTRLKAYVAIGDHNGHAGLGVKCAKEVAEAIKGAMIQAKLAMVPVRRGYWGATIGEVHTVPCKLTGACGSVRVRLVPAPRGTGIVAAPTPKKFLILAGIEDVFTQTTGHTKTLGNFVKATYDAVRQSYGFQTKDLWKVGGVKQSPMDKYAKILAESKKN |
| 40S ribosomal protein S24, putative | SZ | 140 | Entamoeba Histolytica Hm-1:Imss | MATQKSEVTIRTRNLIVNPLLCRKQVVVDIYHPGIVQPKFTEIKEKLAKMYKVKDVQTIVLNGFVTKYGGGKTSGFALIYDTLSALKKFVPKHQLIRAGLDKKTKAPRKARKEHKKKWRMCHSFKDYKKKEMKKASRKKK |
| Small ribosomal subunit protein eS1 | SE | 256 | Entamoeba Histolytica Hm-1:Imss | MATGKNKKYKAGNVKKGSKRKIAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKFGAYNYKFKCEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAASRELTQFVDYLRENKLPKEIVAKCSKVFSMDNVYIRKVKILKAGKIDSLKLLDQHQDTSAPVEAAPVAEEKGEVVEA |
| 40S ribosomal protein S4, putative | SF | 326 | Entamoeba Histolytica Hm-1:Imss | MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLVNLPLDKGIKKPLLQQVNETIKKNKMQKAGIQKASKKSKTTTEKKVTPKAAVEKKEEQVEKIYKKYPKKQAAPKKSKGNKKVVPGKKIGKK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| P-tRNA | sh | 76 | NA | GACCUUAUAGCUCAGUCGGUAGAGCACGGGAUUUAUAAUCCCGGUGUCAUCGGUUCGAUUCCGAUUAAGGUCACCA |
| mRNA | sk | 6 | NA | UUAAUA |
| 17S rRNA | sa | 1947 | NA | UAUCUGGUUGAUCCUGCCAGUAUUAUAUGCUGAUGUUAAAGAUUAAGCCAUGCAUGUGUAAGUAUAAAGACCAAGUAGGAUGAAACUGCGGACGGCUCAUUAUAACAGUAAUAGUUUCUUUGGUUAGUAAAAUACAAGGAUAGCUUUGUGAAUGAUAAAGAUAAUACUUGAGACGAUCCAGUUUGUAUUAGUACAAAAUGGCCAAUUCAUUCAAUGAAUUGAGAAAUGACAUUCUAAGUGAGUUAGGAUGCCACGACAAUUGUAGAACACACAGUGUUUAACAAGUAACCAAUGAGAAUUUCUGAUCUAUCAAUCAGUUGGUAGUAUCGAGGACUACCAAGAUUAUAACGGAUAACGAGGAAUUGGGGUUCGACAUCGGAGAGGGAGCUUUACAGAUGGCUACCACUUCUAAGGAAGGCAGCAGGCGCGUAAAUUACCCACUUUCGAAUUGAAGAGGUAGUGACGACACAUAACUCUAGAGUUGAGUAAAAUCAAUUCUUGAAGGAAUGAGUAGGAGGUAAAUUCUCCUACGAAAUCAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGUGUAUAUUAAAGUUGCUGUGAUUAAAACGCUCGUAGUUGAAUUAAAAUGUGGUUUUAUACAUUUUGAAGACUUUAUGUAAGUAAAGUUUCUAGAAAUGUUAAAUUAAAAUCAAAGAAGGAAACAAUUCAAGUAAUUGAGUUGUUAUUACUUUGAAUAAAAUAAGGUGUUUAAAGCAAAACAUUAUGUUAAUGAAUAUUCAAGCAUGGGACAAUGCUGAGGGGAUGUCAAUAAGACAUUUCGAGAGAAGGAUUAAAAGGAACAAUUGGGGUGAUUCAGAAAAUAACGGGAGAGGUGAAAAUCCAUGAUCGCUAUAAGAUGCACGAGAGCGAAAGCAUUUCACUCAACUGUGUCCAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGACGAUCAGAUACCGUCGUAGUCCUAACUAUAAACGAUGUCAACCAAGGAUUGGAUGAAAUUCAGAUGUACAAAGAUAGAGAAGCAUUGUUUCUAGAUCUGAGUAUAUCAAUAUUACCUUGUUCAGAACUUAAAGAGAAAUCUUGAGUUUAUGGACUUCAGGGGGAGUAUGGUCACAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAAACUUACCAAGACCGAACAGUAGAAGGAAUGACAGAUUAAGAGUUCUUUCAUGAUUUAUUGGGUAGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCAGGUUAAUUCCGGUAACGAACGAGACUGAAACCUAUUAAUUAGUUUUCUGCCUAUAAGACAGAAAUGUUCGCAAGAACAGGUGCGUAAGUACCACUUCUUAAAGGGACACAUUUCAAUUGUCCUAUUUUAAUUGUAGUUAUCUAAUUUCGGUUAGACCUCUUUUAACGUGGGAAAAAGAAAAAGGAAGCAUUCAGCAAUAACAGGUCUGUGAUGCCCUUAGACAUCUUGGGCCGCACGCGCGCUACAAUGGAGUUACUAGAGAGUAUUUUAUCAUUUACACCUUAUUUAUUAGGCUUUGUCUAAUAAUUAAGGAUAGUAAGUGGUGUACCGAGAUUGAAAUAGUUAAGGAAAACUCAAAAGAACGUACAUGACAGGGAUAAAUGAUUGGAAUUAUUUGUUUUGAACGAGGAAUUCCUUGUAAUAUCGAGUCAUUAACUCGAGAUGAAUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUCCUACCGAUUGAAUAAAGAGGUGAAAUUCUAGGAUUCUGUCUUAUAGAUAGAAAAAUGGAUUUAAAUCUCCUUAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-05-19 Deposition Author(s): Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.