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FASTA Sequence PDB Format mmCIF Format
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9UZ7

Cryo-em structure of the nucleosome core particle with site-specific dna-histone crosslinking

PDB DOI: 10.2210/pdb9uz7/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2025-05-16
Deposition Author(s): Ji, G.Y. , Li, H.T. , Shan, X.J. , Zhou, C.Z.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.24 Å

9uz7
Literature

Cryo-em structure of the nucleosome core particle with site-specific dna-histone crosslinking

Ji, G.Y. , Li, H.T. , Shan, X.J. , Zhou, C.Z.

Primary Citation of Related Structures: 9UZ7


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 135 Homo Sapiens , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLSAIHACRVTIMPKDIQLARRIRGERA
Histone H3.1 B 135 Homo Sapiens , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLSAIHACRVTIMPKDIQLARRIRGERA
Histone H4 C 102 Homo Sapiens , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 D 102 Homo Sapiens , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E E 129 Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E F 129 Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J G 125 Homo Sapiens , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J H 125 Homo Sapiens , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTGAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
DNA (145-MER) j 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTCAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-16
Deposition Author(s): Ji, G.Y. , Li, H.T. , Shan, X.J. , Zhou, C.Z.