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FASTA Sequence PDB Format mmCIF Format
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9T74

2'-fluoro-modified pyrimidine (fy) rna aptamer binding to the receptor binding domain (rbd) of the sars-cov-2 spike protein. (focus map: rbd-aptamer)

PDB DOI: 10.2210/pdb9t74/pdb

Classification: RNA
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Rna

Deposited: 2025-11-10
Deposition Author(s): Andersen, E.S. , Kristoffersen, E.L. , Zwergious, N.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.46 Å

9t74
Literature

2'-fluoro-modified pyrimidine (fy) rna aptamer binding to the receptor binding domain (rbd) of the sars-cov-2 spike protein. (focus map: rbd-aptamer)

Andersen, E.S. , Kristoffersen, E.L. , Zwergious, N.H.

Primary Citation of Related Structures: 9T74


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (51-MER) a 51 NA GGXGAXAUUUGUAAUUXXUGGAXXGAUAXUUXXGUXAGGAXAGAGGUUGXX

Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein B 1134 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Rna QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPSGAGSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-11-10
Deposition Author(s): Andersen, E.S. , Kristoffersen, E.L. , Zwergious, N.H.