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FASTA Sequence PDB Format mmCIF Format
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9T56

Cryo-em structure of iscro4-dbl-tbl-tdna-ddna synaptic complex

PDB DOI: 10.2210/pdb9t56/pdb

Classification: RECOMBINATION
Organism(s): Citrobacter Rodentium Icc168 , Synthetic Construct

Deposited: 2025-11-04
Deposition Author(s): Chanez, C. , Fernandez Carrera, J. , Gerecke, S.E. , Jinek, M. , Pelea, O.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.81 Å

9t56
Literature

Cryo-em structure of iscro4-dbl-tbl-tdna-ddna synaptic complex

Chanez, C. , Fernandez Carrera, J. , Gerecke, S.E. , Jinek, M. , Pelea, O.

Primary Citation of Related Structures: 9T56


Proteins
Molecule Chains Sequence Length Organism Sequence
ISCro4 transposase A 341 Citrobacter Rodentium Icc168 , Synthetic Construct SNAMEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLRWLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSKTDAVDARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSIDAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYTGLKERFTHARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFRDRLAGNGKKGKVIIGAMMRKLAQVAYGVLKSGVPFDASRHNPVAASSGSLEHHHHHH
ISCro4 transposase B 341 Citrobacter Rodentium Icc168 , Synthetic Construct SNAMEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLRWLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSKTDAVDARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSIDAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYTGLKERFTHARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFRDRLAGNGKKGKVIIGAMMRKLAQVAYGVLKSGVPFDASRHNPVAASSGSLEHHHHHH
ISCro4 transposase C 341 Citrobacter Rodentium Icc168 , Synthetic Construct SNAMEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLRWLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSKTDAVDARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSIDAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYTGLKERFTHARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFRDRLAGNGKKGKVIIGAMMRKLAQVAYGVLKSGVPFDASRHNPVAASSGSLEHHHHHH
ISCro4 transposase D 341 Citrobacter Rodentium Icc168 , Synthetic Construct SNAMEQELHFIGIDVSKAKLDVDVLRPDGRHRSKKFANTPKGHDELLRWLSGHRVAPAHICMEATSTYMEDVAAHLSDAGYTVSVINPALGKAFAQSEGLRSKTDAVDARMLAEFCRQKRPPAWEAPHPVERALRALVLRHQSLTDMHTQELNRLETAREVQRPSIDAHLLWLHAELKRIEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYTGLKERFTHARQFAAFAGLTPRRYESGSSVNRASRMSKAGHASLRRALYMPAMVAVSKTEWGRAFRDRLAGNGKKGKVIIGAMMRKLAQVAYGVLKSGVPFDASRHNPVAASSGSLEHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Target-binding loop (TBL) RNA e 111 NA GGGAGUGCAGGGAGAACCGGCCAGUUCUCUCUGCCAUGCGGUCCGCAUGCCGUAUCAGGCCUCAGGCUAAUAACCUGUGACGUAGAUUUAUGCAGCGGACCGCCGUUUUUU
Donor-binding loop (DBL) RNA f 79 NA GGGCAAGUGACAAACCGGACAGUAUCAUGGACCGGUUUUCCCGGUAAUCCGCAUUCACAAGGCUGGUCUCACUUUUUUU
target DNA (tRNA) top strand g 38 NA GCCGGGTAATACCCTTATCAGGCCTACGTCACAGCTCG
target DNA (tDNA) bottom strand h 38 NA CGAGCTGTGACGTAGGCCTGATAAGGGTATTACCCGGC
donor DNA (dDNA) top strand i 44 NA TGCAGGCGATAACAGTATCTTGTATTATCCCTTCAGTGCAGAGA
donor DNA (dDNA) bottom strand j 44 NA TCTCTGCACTGAAGGGATAATACAAGATACTGTTATCGCCTGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-11-04
Deposition Author(s): Chanez, C. , Fernandez Carrera, J. , Gerecke, S.E. , Jinek, M. , Pelea, O.