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FASTA Sequence PDB Format mmCIF Format
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9SQ5

Cryo-em structure of the ddb1deltab-crbn-pomalidomide complex bound to ikzf1(zf1-zf2-helix)

PDB DOI: 10.2210/pdb9sq5/pdb

Classification: LIGASE
Organism(s): Homo Sapiens

Deposited: 2025-09-19
Deposition Author(s): Cavadini, S. , Galli, P. , Kater, L. , Kempf, G. , Thoma, N.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.68 Å

9sq5
Literature

Cryo-em structure of the ddb1deltab-crbn-pomalidomide complex bound to ikzf1(zf1-zf2-helix)

Cavadini, S. , Galli, P. , Kater, L. , Kempf, G. , Thoma, N.H.

Primary Citation of Related Structures: 9SQ5


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA damage-binding protein 1 A 864 Homo Sapiens MGSSHHHHHHSAAHIVMVDAYKPTKGGRMSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGGNGNSGEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
Protein cereblon B 466 Homo Sapiens MGSSHHHHHHSAVDENLYFQGGGRMAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDKVILCL
Isoform Ik7 of DNA-binding protein Ikaros C 111 Homo Sapiens MDWSHPQFEKSAVMSGLNDIFEAQKIEWHEGGGGSGGGGDENLYFQGGGRGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRTHSVIKEE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-09-19
Deposition Author(s): Cavadini, S. , Galli, P. , Kater, L. , Kempf, G. , Thoma, N.H.