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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9SJE

Cryo-em structure of the open-closed dextran utilisome (bt3087-bt3090), with ghdex d297a e360a catalytic inactivation, with bound imo4, imo6, imo7, and imo8

PDB DOI: 10.2210/pdb9sje/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Bacteroides Thetaiotaomicron Vpi-5482

Deposited: 2025-08-31
Deposition Author(s): Basle, A. , Feasey, M. , Van Den Berg, B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

9sje
Literature

Cryo-em structure of the open-closed dextran utilisome (bt3087-bt3090), with ghdex d297a e360a catalytic inactivation, with bound imo4, imo6, imo7, and imo8

Basle, A. , Feasey, M. , Van Den Berg, B.

Primary Citation of Related Structures: 9SJE


Proteins
Molecule Chains Sequence Length Organism Sequence
SusC homolog A 999 Bacteroides Thetaiotaomicron Vpi-5482 MEQSIKSKGFEHRLLLIMWGLLLSLSAFAQQITVKGHVVDATGEPVIGASVIEGKSTNGTITDIDGNFSLNVSANSALTISFVGYKTQTVSVNGKTALKVTLQEDTEVLDEVVVVGYGTMKKSDLTGAVSSVGVKDIKDSPVANIGQAMQGKVSGVQIIDAGKPGDNVTIKIRGLGTINNSNPLVVIDGIPTDLGLSSLNMADVERVDVLKDASATAIYGSRGANGVVMITSKRGAEGAGKVTVNANWAIQNATKVPDMLNAAQYAALSNDMLSNNDDNTNPYWADPSSLGKGTNWLDEMLRTGVKQSYSVSYSGGTEKAHYYVSGGFLDQSGIVKSVNYRRFNFQANSDAQVNKWLKFTTNLTFSTDVKEGGTYSIGDAMKALPTQPVKNDDGSWSGPGQEAQWYGSIRNPIGTLHMMTNETKGYNFLANITGEITFTKWLKLKSTFGYDAKFWFADNFTPAYDWKPNPVEESSRYKSDNKSFTYLWDNYFVFDHTFAKKHRVGVMAGSSAQWNNYDYLNAQKNIFMFDNIHEMDNGEKMYSLGGSQSDWALLSLMARLNYSYEDKYLLTATVRRDGSSRFGKNNRWGTFPSVSLAWRVSQEDWFPKDNFLMNDLKLRVGYGVTGNQEIGNYGFVASYNTGVYPFGNNNSTALVSTTLSNPNIHWEEVRQANFGVDMSLFDSRVSLSLDAYIKNTNDMLVKASIPITSGFEDTTETFTNAGKMRNKGVEMTLRTINLKGIFSWESALTATYNKNEILDLNSETPMFINQIGNSYVTMLKAGYPINVFYGYVTDGLFQNWGEVNRHATQPGAAPGDIRFRDLNNDGVINDEDRTILGNPNPNWFFSLSNNLSYKGWELSVFLQGVAGNKIYNANNVDNEGMAAAYNQTTAVLNRWTGEGTSYSMPRAIWGDPNQNCRVSDRFVENGSYLRLKNITLSYTLPKKWLQKIQLENARISFSCENVATITRYSGFDPEVDVNGIDSSRYPISRTFSMGLNFNF
SusC homolog C 999 Bacteroides Thetaiotaomicron Vpi-5482 MEQSIKSKGFEHRLLLIMWGLLLSLSAFAQQITVKGHVVDATGEPVIGASVIEGKSTNGTITDIDGNFSLNVSANSALTISFVGYKTQTVSVNGKTALKVTLQEDTEVLDEVVVVGYGTMKKSDLTGAVSSVGVKDIKDSPVANIGQAMQGKVSGVQIIDAGKPGDNVTIKIRGLGTINNSNPLVVIDGIPTDLGLSSLNMADVERVDVLKDASATAIYGSRGANGVVMITSKRGAEGAGKVTVNANWAIQNATKVPDMLNAAQYAALSNDMLSNNDDNTNPYWADPSSLGKGTNWLDEMLRTGVKQSYSVSYSGGTEKAHYYVSGGFLDQSGIVKSVNYRRFNFQANSDAQVNKWLKFTTNLTFSTDVKEGGTYSIGDAMKALPTQPVKNDDGSWSGPGQEAQWYGSIRNPIGTLHMMTNETKGYNFLANITGEITFTKWLKLKSTFGYDAKFWFADNFTPAYDWKPNPVEESSRYKSDNKSFTYLWDNYFVFDHTFAKKHRVGVMAGSSAQWNNYDYLNAQKNIFMFDNIHEMDNGEKMYSLGGSQSDWALLSLMARLNYSYEDKYLLTATVRRDGSSRFGKNNRWGTFPSVSLAWRVSQEDWFPKDNFLMNDLKLRVGYGVTGNQEIGNYGFVASYNTGVYPFGNNNSTALVSTTLSNPNIHWEEVRQANFGVDMSLFDSRVSLSLDAYIKNTNDMLVKASIPITSGFEDTTETFTNAGKMRNKGVEMTLRTINLKGIFSWESALTATYNKNEILDLNSETPMFINQIGNSYVTMLKAGYPINVFYGYVTDGLFQNWGEVNRHATQPGAAPGDIRFRDLNNDGVINDEDRTILGNPNPNWFFSLSNNLSYKGWELSVFLQGVAGNKIYNANNVDNEGMAAAYNQTTAVLNRWTGEGTSYSMPRAIWGDPNQNCRVSDRFVENGSYLRLKNITLSYTLPKKWLQKIQLENARISFSCENVATITRYSGFDPEVDVNGIDSSRYPISRTFSMGLNFNF
SusD homolog B 506 Bacteroides Thetaiotaomicron Vpi-5482 MKKKLTFIMILAVLALTSCSDFLDKYPKYGVDPESEVTNEIAVALTTACYKTLQSSNMYNQRLWSLDILAGNSEVGAGGGTDGLETVQAANFIAQSDNGFALYVWRSPWVGIGRCNIVLSNLPSAAISDEIKDRCMGEAYFLRAHYYYILVRLYGGVPLRLQPFEPGQSTDIARNTVDEVYAQILSDCKNAVDMLPPKSSYGENDKGRACKEAAMAMLADIYLTLAPNHRDYYNEVVTLCDQITAMGYDLSQCKYADNFDATINNGAESLFEVQYSGSTEYDFWGGDNQSSWLSTFMGPRNSGMVAGAYGWNLPTEEFIKEYEAGDLRKDVTVLYQGCPAFDGMEYRRSWSNTGYNVRKFLVSKTVSPEYNTNPNNFVVYRYADVLLKKAEALNELGHPDQAAAPLNIVRQRAGLADVPTTLNQETMREKIIHERRMELAFEGHRWFDMIRINNGNYAIEFLKSIGKNQVTKERLLLPIPQTEMDSNNLMTQNPGYAAAAHHHHHH
SusD homolog D 506 Bacteroides Thetaiotaomicron Vpi-5482 MKKKLTFIMILAVLALTSCSDFLDKYPKYGVDPESEVTNEIAVALTTACYKTLQSSNMYNQRLWSLDILAGNSEVGAGGGTDGLETVQAANFIAQSDNGFALYVWRSPWVGIGRCNIVLSNLPSAAISDEIKDRCMGEAYFLRAHYYYILVRLYGGVPLRLQPFEPGQSTDIARNTVDEVYAQILSDCKNAVDMLPPKSSYGENDKGRACKEAAMAMLADIYLTLAPNHRDYYNEVVTLCDQITAMGYDLSQCKYADNFDATINNGAESLFEVQYSGSTEYDFWGGDNQSSWLSTFMGPRNSGMVAGAYGWNLPTEEFIKEYEAGDLRKDVTVLYQGCPAFDGMEYRRSWSNTGYNVRKFLVSKTVSPEYNTNPNNFVVYRYADVLLKKAEALNELGHPDQAAAPLNIVRQRAGLADVPTTLNQETMREKIIHERRMELAFEGHRWFDMIRINNGNYAIEFLKSIGKNQVTKERLLLPIPQTEMDSNNLMTQNPGYAAAAHHHHHH
BT3088 (SGBPdex) E 504 Bacteroides Thetaiotaomicron Vpi-5482 MKKYIYQILCSLFIGGAMVSCAEDYMETDKGHDTLTLTVNQQEIVLNEKNHTQEALTLSWTTGTNYGSGNRISYTLEIAKAGTDFARAYSVDLGTGTYQWTKKTEELNQFLNTQLGVGYAEKVSLEARITATVAGMEEKEQRATVALDVTTYQPVTPTLYLIGEAAPNGWSADQATPMERTDNGQFTWTGKLNTGVFKFITTLGEFLPSYNRDAAAGEELRLIYRTSGDEPDEPFTVSKEATYIVKVDLLDLTMTMTETENIGWRFEEFYIVGSFTGDNGWGFEALSKDAVQMNLFHYGAVIPWKADGDFKFTSVTDFGQSDAFFHPTEGNAPYTSTSVVLGGEDNKWQMKESECGKAYKVLFLTAKGKEKMLMRPFTPYEGLYLVGDATPNGWSIDNATPMAKSADSPYIFTWSGTLNTGEMKISCDKQSDWNGDWLMADKSGKAPTGEVETALFTSKTDAELKNMYPDTDLGSLDNKWNIQEAGSYRITIDQLKETISIVKQ
BT3088 (SGBPdex) F 504 Bacteroides Thetaiotaomicron Vpi-5482 MKKYIYQILCSLFIGGAMVSCAEDYMETDKGHDTLTLTVNQQEIVLNEKNHTQEALTLSWTTGTNYGSGNRISYTLEIAKAGTDFARAYSVDLGTGTYQWTKKTEELNQFLNTQLGVGYAEKVSLEARITATVAGMEEKEQRATVALDVTTYQPVTPTLYLIGEAAPNGWSADQATPMERTDNGQFTWTGKLNTGVFKFITTLGEFLPSYNRDAAAGEELRLIYRTSGDEPDEPFTVSKEATYIVKVDLLDLTMTMTETENIGWRFEEFYIVGSFTGDNGWGFEALSKDAVQMNLFHYGAVIPWKADGDFKFTSVTDFGQSDAFFHPTEGNAPYTSTSVVLGGEDNKWQMKESECGKAYKVLFLTAKGKEKMLMRPFTPYEGLYLVGDATPNGWSIDNATPMAKSADSPYIFTWSGTLNTGEMKISCDKQSDWNGDWLMADKSGKAPTGEVETALFTSKTDAELKNMYPDTDLGSLDNKWNIQEAGSYRITIDQLKETISIVKQ
Cycloisomaltooligosaccharide glucanotransferase G 592 Bacteroides Thetaiotaomicron Vpi-5482 MKKIIYLVAAFLCLSCSDDHESNPQNGGASGSVTEVTPVTSDLCVELTTDKAFYKPNETVTFTAADALPAGTKVRYRLLGEIVGEEPVSGTNWTWKAPSTDFKGYMAELYRQENGTDVIVGTIAVDVSSHPARFPRYGFVADFDGVKTEEKTLEEMAYLNRHHINWVQFQDWHNKHHWPLGGTRTQLDEEYLDIANRPVHTSSVKNYIKAQQHFGMKSMFYNLCFGALKDAASDGVKEEWYLFKDASHTTKDSHDLPSGWKSNIYLVDPSDKEWQQYMAERNDDVYANFAFDGYQIAQLGKRGTLYNYNGTPVNLREGYASFIEAMKQAHPDKSLVMNAVSRYGARQIGETGKVDFFYNAMWADEADFTHLKAVLYENGVYGNNQLNTVFAAYMNYNKADHRGEFNTAGILLTDAVMFALGGSHLELGGDHMLCKEYFPNDNLTMSEELKTAMVHYYDFLTSYQNLLRDGGTENSIAMNCTNGEMKLNVWPPKLGSVTTYAKQVDGKQVVHLLNFSQANSLSWRDVDGTMPEPALITKATLQMNLPAKVNKLWVASPDVHGGALQELAFTQENGVVSFTLPALKYWTMIVAE
Cycloisomaltooligosaccharide glucanotransferase H 592 Bacteroides Thetaiotaomicron Vpi-5482 MKKIIYLVAAFLCLSCSDDHESNPQNGGASGSVTEVTPVTSDLCVELTTDKAFYKPNETVTFTAADALPAGTKVRYRLLGEIVGEEPVSGTNWTWKAPSTDFKGYMAELYRQENGTDVIVGTIAVDVSSHPARFPRYGFVADFDGVKTEEKTLEEMAYLNRHHINWVQFQDWHNKHHWPLGGTRTQLDEEYLDIANRPVHTSSVKNYIKAQQHFGMKSMFYNLCFGALKDAASDGVKEEWYLFKDASHTTKDSHDLPSGWKSNIYLVDPSDKEWQQYMAERNDDVYANFAFDGYQIAQLGKRGTLYNYNGTPVNLREGYASFIEAMKQAHPDKSLVMNAVSRYGARQIGETGKVDFFYNAMWADEADFTHLKAVLYENGVYGNNQLNTVFAAYMNYNKADHRGEFNTAGILLTDAVMFALGGSHLELGGDHMLCKEYFPNDNLTMSEELKTAMVHYYDFLTSYQNLLRDGGTENSIAMNCTNGEMKLNVWPPKLGSVTTYAKQVDGKQVVHLLNFSQANSLSWRDVDGTMPEPALITKATLQMNLPAKVNKLWVASPDVHGGALQELAFTQENGVVSFTLPALKYWTMIVAE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-08-31
Deposition Author(s): Basle, A. , Feasey, M. , Van Den Berg, B.