9SJB
Solution structure of clostridioides difficile cspb oligomer determined by cryoem
PDB DOI: 10.2210/pdb9sjb/pdb
Classification: HYDROLASE Organism(s): Clostridioides Difficile
Deposited: 2025-08-31 Deposition Author(s): Alcorlo, M. , Hermoso, J. , Lazaro, M. , Valle, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.75 Å
Solution structure of clostridioides difficile cspb oligomer determined by cryoem
Alcorlo, M. , Hermoso, J. , Lazaro, M. , Valle, M.
Primary Citation of Related Structures: 9SJB
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Subtilisin-like serine germination related protease | A | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | B | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | E | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | F | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | I | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | J | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | LL | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | M | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | P | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | Q | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | T | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | V | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | Y | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | Z | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | AA | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | BB | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | EE | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | FF | 68 | Clostridioides Difficile | MIIINYELIVKYNGDILRLEEELGVSVEILNSSYAIITSSNEEDVNILLTYPEIEFIEKPFILQTCSP |
| Subtilisin-like serine germination related protease | C | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | D | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | G | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | H | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | K | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | L | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | N | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | O | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | R | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | S | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | W | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | X | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | YY | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | ZZ | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | CC | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
| Subtilisin-like serine germination related protease | GG | 492 | Clostridioides Difficile | MQDVQSFSSTGITGFKNRTGLTGKGTIIGIIDSGIDYTLPVFRDSDGRSKILYYWDQSIQGNPPEGFREGTLYTNEDINNAIDGSMYIPISTTSLHGTHVAGICATIASDARIIVVRVGNIQTDIFSRSTEFMRAIKFILDRALELRMPVTLNISYGSNEGSHRGTSLFEQYIDDMCLFWKNNIVVAAGNNADKGGHKRIRLQNNITEEVEFIVGEGERILNINIWPDFVDDFSVHLVNPSNNQTQAISLTSGEIRNTLGETRITGYFYPIAPYSLTRRVTLQLSSNTQITPGLWKIVFEPIDIVTGNVNIYLPTSEGLNRNTRFLIPTQELTVTVPGTASRVITVGSFNSRTDIVSIFSGEGDTQLGVFKPDLLAPGEDIVSFLPGGTSGALTGTSMATPHVTGVCSLFMEWGIVNGNDLFLYSQKLRALLLKGARRLSNQSYPNNSSGFGFLNLSDIDLYTLSNINQDLETEDMGYRSINKSLEHHHHHH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-08-31 Deposition Author(s): Alcorlo, M. , Hermoso, J. , Lazaro, M. , Valle, M.