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9SDQ

Cryo-em structure of the arabidopsis thaliana 40s ribosomal subunit (head)

PDB DOI: 10.2210/pdb9sdq/pdb

Classification: RIBOSOME
Organism(s): Arabidopsis Thaliana

Deposited: 2025-08-14
Deposition Author(s): Butcher, S.J. , Guryanov, S. , Haakonsson, A. , Helariutta, Y. , Hellmann, E. , Huiskonen, J.T. , Kajander, T. , Lu, X. , Paatero, A.O. , Paavilainen, V.O. , Rehan, S. , Ruonala, R. , Sudeep, K. , Tranter, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

9sdq
Literature

Cryo-em structure of the arabidopsis thaliana 40s ribosomal subunit (head)

Butcher, S.J. , Guryanov, S. , Haakonsson, A. , Helariutta, Y. , Hellmann, E. , Huiskonen, J.T. , Kajander, T. , Lu, X. , Paatero, A.O. , Paavilainen, V.O. , Rehan, S. , Ruonala, R. , Sudeep, K. , Tranter, D.

Primary Citation of Related Structures: 9SDQ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (500-MER) 2 498 NA AUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACXCAACACGGGGAAACUUACCAGGUCCAGACAUAGUAAGGAUUGACAGACUGAGAGCUCUUUCUUGAUUCUAUGGGUGGUGGUGCAUGGCNGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUCAGCCUGCUAACUAGCUACGUGGAGGCAUCCCUUCACGGCCGGCUUCUUAGAGGGACUAUGGCCGUUUAGGCCAAGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUACACUGAUGUAUUCAACGAGUUCACACCUUGGCCGACAGGCCCGGGUAAUCUUUGAAAUUUCAUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUCAACGAGGAAUUCCUAGUAAGCGCGAGUCAUCAGCUCGCGUUGACUACGUCCCUGCCCUUUGUACACACCG

Proteins
Molecule Chains Sequence Length Organism Sequence
Small ribosomal subunit protein uS14z/uS14y/uS14x D 56 Arabidopsis Thaliana MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR
Small ribosomal subunit protein eS25y E 108 Arabidopsis Thaliana MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT
Small ribosomal subunit protein eS10x BK 179 Arabidopsis Thaliana MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSGRGFGRGAGGYSAAAPSGSGLP
Small ribosomal subunit protein eS17w BR 141 Arabidopsis Thaliana MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFGGGRAPRRY
Small ribosomal subunit protein uS3z BD 250 Arabidopsis Thaliana MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAAPVTLVQEAPLTTVDYPEMIPPVA
Small ribosomal subunit protein uS7z BF 207 Arabidopsis Thaliana MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Small ribosomal subunit protein uS19x BP 152 Arabidopsis Thaliana MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK
Small ribosomal subunit protein uS9z BQ 146 Arabidopsis Thaliana MATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR
Small ribosomal subunit protein uS13z/uS13y/uS13x BS 152 Arabidopsis Thaliana MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Small ribosomal subunit protein eS19x BT 142 Arabidopsis Thaliana MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIAAA
Small ribosomal subunit protein uS10z/uS10x BU 124 Arabidopsis Thaliana MATAYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Small ribosomal subunit protein eS28x BC 64 Arabidopsis Thaliana MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDSDRFIMRNVKGPVREGDVLTLLESEREARRLR
Experimental Data

Method: ELECTRON MICROSCOPY