9S6R
Ternary cryo-em structure of yeast alg3 with dol25-pp-glcnac2man5, dol25-p-man, and fab
PDB DOI: 10.2210/pdb9s6r/pdb
Classification: TRANSFERASE Organism(s): Saccharomyces Cerevisiae , Synthetic Construct
Deposited: 2025-08-01 Deposition Author(s): Aebi, M. , Agrawal, P. , Alexander, J.A.N. , Chen, S.Y. , De Capitani, M. , Irobalieva, R.N. , Kossiakoff, A.A. , Kowal, J. , Locher, K.P. , Meirelles, M.A. , Mukherjee, S. , Reymond, J.L. , Riniker, S. , Rossi, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.08 Å
Ternary cryo-em structure of yeast alg3 with dol25-pp-glcnac2man5, dol25-p-man, and fab
Aebi, M. , Agrawal, P. , Alexander, J.A.N. , Chen, S.Y. , De Capitani, M. , Irobalieva, R.N. , Kossiakoff, A.A. , Kowal, J. , Locher, K.P. , Meirelles, M.A. , Mukherjee, S. , Reymond, J.L. , Riniker, S. , Rossi, L.
Primary Citation of Related Structures: 9S6R
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Sc-16 Fab heavy chain | H | 240 | Saccharomyces Cerevisiae , Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNFSSSSIHWVRQAPGKGLEWVASISSSSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSQKMSYWWWYFYHYWPAIDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT |
| Sc-16 Fab light chain | L | 215 | Saccharomyces Cerevisiae , Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSSLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase | A | 467 | Saccharomyces Cerevisiae , Synthetic Construct | MEGEQSPQGEKSLQRKQFVRPPLDLWQDLKDGVRYVIFDCRANLIVMPLLILFESMLCKIIIKKVAYTEINYKAYMEQIEMIQLDGMLDYSQVSGGTGPLVYPAGHVLIYKMMYWLTEGMDHVERGQVFFRYLYLLTLALQMACYYLLHLPPWCVVLACLSKRLHSIYVLRLFNDCFTTLFMVVTVLGAIVASRCHQRPKLKKSLALVISATYSMAVSIKMNALLYFPAMMISLFILNDANVILTLLDLVAMIAWQVAVAVPFLRSFPQQYLHCAFNFGRKFMYQWSINWQMMDEEAFNDKRFHLALLISHLIALTTLFVTRYPRILPDLWSSLCHPLRKNAVLNANPAKTIPFVLIASNFIGVLFSRSLHYQFLSWYHWTLPILIFWSGMPFFVGPIWYVLHEWCWNSYPPNSQASTLLLALNTVLLLLLALTQLSGSVALAKSHLRTTSSMEKKLNVDALEVLFQ |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-08-01 Deposition Author(s): Aebi, M. , Agrawal, P. , Alexander, J.A.N. , Chen, S.Y. , De Capitani, M. , Irobalieva, R.N. , Kossiakoff, A.A. , Kowal, J. , Locher, K.P. , Meirelles, M.A. , Mukherjee, S. , Reymond, J.L. , Riniker, S. , Rossi, L.