PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9RDT

Structure of the rhgb07 prefusion, closed-state trimeric spike protein

PDB DOI: 10.2210/pdb9rdt/pdb

Classification: VIRAL PROTEIN
Organism(s): Sarbecovirus Sp. Rhgb07

Deposited: 2025-06-03
Deposition Author(s): Dong, C.N. , Ekundayo, B. , Lau, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å

9rdt
Literature

Structure of the rhgb07 prefusion, closed-state trimeric spike protein

Dong, C.N. , Ekundayo, B. , Lau, K.

Primary Citation of Related Structures: 9RDT


Proteins
Molecule Chains Sequence Length Organism Sequence
RhGB07 Spike- T4 foldon fusion protein C 1255 Sarbecovirus Sp. Rhgb07 DGCGRLSQKTQPKLEQFNSSRRGLYYFDDIFRSSLRVLTSGYFLPFGSNVTRYEVKQVPQVPIYYDNPLVPFGHGVYFAVTEKSNVVRGWIFGSTMDNTTQSAVLVNNGTHIVVNVCNFNFCADPMFAVSAGQSYKSWIYTSSTNCTYFQAFPFAIETRPNGTGPFTHLREHVFRNVDGFLHVYHNYEVINVQNGLPSGFSVLRPIFKLPLGLNITYIKAVMTLFSSTTSNFIAAVASLHYVGYLQPRTMLFHFDQNGTIVDAIDCSQNPLSELKCTTKSFSLEKGIYQTSNFRVTPTTEVIRFPNVTQLCPFSDVFNRTKFPSVYAWERMSIRDCVADYAVLYNSSISFSTFECYGVSPTKLNDLCFSSVYADYFVVRGDDVKQIAPGKTGVIADYNYKLPDDFVGCVLAWNSRHVDSKQGFYYRLFRHGKIKPYQRDMSRELYSPSGTPCTTEGFNCYDPLAHYAFASPGIGTGYQPFRVVVLSFQLLNAPATVCGPKQSTDLVKNKCVNFNFNGLTGTGVLTDSVKKFQPFQQFGRDSSDFTDSVKDPKTLEILDITPCSYGGVSVITPGTNTSDAVAVLYQDVNCTDVPTMLHIDQVSSDWRVYAANTGGNMFQTQAGCLVGATYDNTSYECDIPVGAGVCAKFQINTGASQSSILAYTMSLGEDSNVAYSNNSIAIPTNFSISVTTEVLPVSMTKTSVDCNMYICGDSTECSSLLLQYGSFCQQLNRALAGVSVEQDKNTQDVFAQVKSIYKVPAIKDFGGFNFSHILPDPAKPSKRSFIEDLLYNKVTLADPGFMKQYGDCLGGVNARDLICAQKFNGLTVLPPLLTDDMIAAYTSALVSGTALSGYTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTATALGKLQDVINQNAIALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQEQNFTTAPAICHKGKAHFPREGVFVTNGTHWFVTQRNFYQPEVITTENTFESGNCDVVIGIVNNTVYDPLQPELESFKEELDKYFKNHTSPEVGFDDISGINASVVDIKKEIAHLNEIASKLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
RhGB07 Spike- T4 foldon fusion protein B 1255 Sarbecovirus Sp. Rhgb07 DGCGRLSQKTQPKLEQFNSSRRGLYYFDDIFRSSLRVLTSGYFLPFGSNVTRYEVKQVPQVPIYYDNPLVPFGHGVYFAVTEKSNVVRGWIFGSTMDNTTQSAVLVNNGTHIVVNVCNFNFCADPMFAVSAGQSYKSWIYTSSTNCTYFQAFPFAIETRPNGTGPFTHLREHVFRNVDGFLHVYHNYEVINVQNGLPSGFSVLRPIFKLPLGLNITYIKAVMTLFSSTTSNFIAAVASLHYVGYLQPRTMLFHFDQNGTIVDAIDCSQNPLSELKCTTKSFSLEKGIYQTSNFRVTPTTEVIRFPNVTQLCPFSDVFNRTKFPSVYAWERMSIRDCVADYAVLYNSSISFSTFECYGVSPTKLNDLCFSSVYADYFVVRGDDVKQIAPGKTGVIADYNYKLPDDFVGCVLAWNSRHVDSKQGFYYRLFRHGKIKPYQRDMSRELYSPSGTPCTTEGFNCYDPLAHYAFASPGIGTGYQPFRVVVLSFQLLNAPATVCGPKQSTDLVKNKCVNFNFNGLTGTGVLTDSVKKFQPFQQFGRDSSDFTDSVKDPKTLEILDITPCSYGGVSVITPGTNTSDAVAVLYQDVNCTDVPTMLHIDQVSSDWRVYAANTGGNMFQTQAGCLVGATYDNTSYECDIPVGAGVCAKFQINTGASQSSILAYTMSLGEDSNVAYSNNSIAIPTNFSISVTTEVLPVSMTKTSVDCNMYICGDSTECSSLLLQYGSFCQQLNRALAGVSVEQDKNTQDVFAQVKSIYKVPAIKDFGGFNFSHILPDPAKPSKRSFIEDLLYNKVTLADPGFMKQYGDCLGGVNARDLICAQKFNGLTVLPPLLTDDMIAAYTSALVSGTALSGYTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTATALGKLQDVINQNAIALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQEQNFTTAPAICHKGKAHFPREGVFVTNGTHWFVTQRNFYQPEVITTENTFESGNCDVVIGIVNNTVYDPLQPELESFKEELDKYFKNHTSPEVGFDDISGINASVVDIKKEIAHLNEIASKLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
RhGB07 Spike- T4 foldon fusion protein A 1255 Sarbecovirus Sp. Rhgb07 DGCGRLSQKTQPKLEQFNSSRRGLYYFDDIFRSSLRVLTSGYFLPFGSNVTRYEVKQVPQVPIYYDNPLVPFGHGVYFAVTEKSNVVRGWIFGSTMDNTTQSAVLVNNGTHIVVNVCNFNFCADPMFAVSAGQSYKSWIYTSSTNCTYFQAFPFAIETRPNGTGPFTHLREHVFRNVDGFLHVYHNYEVINVQNGLPSGFSVLRPIFKLPLGLNITYIKAVMTLFSSTTSNFIAAVASLHYVGYLQPRTMLFHFDQNGTIVDAIDCSQNPLSELKCTTKSFSLEKGIYQTSNFRVTPTTEVIRFPNVTQLCPFSDVFNRTKFPSVYAWERMSIRDCVADYAVLYNSSISFSTFECYGVSPTKLNDLCFSSVYADYFVVRGDDVKQIAPGKTGVIADYNYKLPDDFVGCVLAWNSRHVDSKQGFYYRLFRHGKIKPYQRDMSRELYSPSGTPCTTEGFNCYDPLAHYAFASPGIGTGYQPFRVVVLSFQLLNAPATVCGPKQSTDLVKNKCVNFNFNGLTGTGVLTDSVKKFQPFQQFGRDSSDFTDSVKDPKTLEILDITPCSYGGVSVITPGTNTSDAVAVLYQDVNCTDVPTMLHIDQVSSDWRVYAANTGGNMFQTQAGCLVGATYDNTSYECDIPVGAGVCAKFQINTGASQSSILAYTMSLGEDSNVAYSNNSIAIPTNFSISVTTEVLPVSMTKTSVDCNMYICGDSTECSSLLLQYGSFCQQLNRALAGVSVEQDKNTQDVFAQVKSIYKVPAIKDFGGFNFSHILPDPAKPSKRSFIEDLLYNKVTLADPGFMKQYGDCLGGVNARDLICAQKFNGLTVLPPLLTDDMIAAYTSALVSGTALSGYTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTATALGKLQDVINQNAIALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQEQNFTTAPAICHKGKAHFPREGVFVTNGTHWFVTQRNFYQPEVITTENTFESGNCDVVIGIVNNTVYDPLQPELESFKEELDKYFKNHTSPEVGFDDISGINASVVDIKKEIAHLNEIASKLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-06-03
Deposition Author(s): Dong, C.N. , Ekundayo, B. , Lau, K.