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9R35

Crystal structure of the pseudomonas putida xre-res toxin-antitoxin complex bound to promoter dna

PDB DOI: 10.2210/pdb9r35/pdb

Classification: GENE REGULATION
Organism(s): Pseudomonas Putida Kt2440 , Synthetic Construct

Deposited: 2025-05-02
Deposition Author(s): Brodersen, D.E. , Henriksen, F.O.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.7 Å

Literature

Crystal structure of the pseudomonas putida xre-res toxin-antitoxin complex bound to promoter dna

Brodersen, D.E. , Henriksen, F.O.G.

Primary Citation of Related Structures: 9R35


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA reverse (30-mer) a 30 NA GCTCCTTTTCGGCATTTGCCGACAAGTATG
DNA reverse (30-mer) d 30 NA GCTCCTTTTCGGCATTTGCCGACAAGTATG
DNA forward (30-mer) g 30 NA CATACTTGTCGGCAAATGCCGAAAAGGAGC
DNA forward (30-mer) b 30 NA CATACTTGTCGGCAAATGCCGAAAAGGAGC
DNA forward (30-mer) c 30 NA CATACTTGTCGGCAAATGCCGAAAAGGAGC
DNA forward (30-mer) e 30 NA CATACTTGTCGGCAAATGCCGAAAAGGAGC
DNA reverse (30-mer) f 30 NA GCTCCTTTTCGGCATTTGCCGACAAGTATG
DNA reverse (30-mer) h 30 NA GCTCCTTTTCGGCATTTGCCGACAAGTATG

Proteins
Molecule Chains Sequence Length Organism Sequence
Toxin Res J 158 Pseudomonas Putida Kt2440 , Synthetic Construct MGSSHHHHHHSQDPILWRISAYADLSGTGGLRVSGRWHQAGRPVVYAATSPPGAMLEVLVHLEIDPEDFPTTMRLLRIELPDTVSQAQLPALQPGWSAQPELTRTLGNRFLDDCSALLLPVPSAIMPSTTNYLFNPRHPQAQSAKIQVEDFTPDSRLF
Toxin Res M 158 Pseudomonas Putida Kt2440 , Synthetic Construct MGSSHHHHHHSQDPILWRISAYADLSGTGGLRVSGRWHQAGRPVVYAATSPPGAMLEVLVHLEIDPEDFPTTMRLLRIELPDTVSQAQLPALQPGWSAQPELTRTLGNRFLDDCSALLLPVPSAIMPSTTNYLFNPRHPQAQSAKIQVEDFTPDSRLF
Toxin Res P 158 Pseudomonas Putida Kt2440 , Synthetic Construct MGSSHHHHHHSQDPILWRISAYADLSGTGGLRVSGRWHQAGRPVVYAATSPPGAMLEVLVHLEIDPEDFPTTMRLLRIELPDTVSQAQLPALQPGWSAQPELTRTLGNRFLDDCSALLLPVPSAIMPSTTNYLFNPRHPQAQSAKIQVEDFTPDSRLF
Toxin Res S 158 Pseudomonas Putida Kt2440 , Synthetic Construct MGSSHHHHHHSQDPILWRISAYADLSGTGGLRVSGRWHQAGRPVVYAATSPPGAMLEVLVHLEIDPEDFPTTMRLLRIELPDTVSQAQLPALQPGWSAQPELTRTLGNRFLDDCSALLLPVPSAIMPSTTNYLFNPRHPQAQSAKIQVEDFTPDSRLF
Toxin Res V 158 Pseudomonas Putida Kt2440 , Synthetic Construct MGSSHHHHHHSQDPILWRISAYADLSGTGGLRVSGRWHQAGRPVVYAATSPPGAMLEVLVHLEIDPEDFPTTMRLLRIELPDTVSQAQLPALQPGWSAQPELTRTLGNRFLDDCSALLLPVPSAIMPSTTNYLFNPRHPQAQSAKIQVEDFTPDSRLF
XRE anti-toxin I 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin K 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin L 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin N 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin O 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin Q 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin R 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin T 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin U 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin W 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
XRE anti-toxin X 149 Pseudomonas Putida Kt2440 , Synthetic Construct MLAEVLRDNGYHEYRARLQALLDIPELASDFEIHTRITDGFAATWLVKLTERGVLTPVERDQIIPLRTLKSRIERDQPLTVDESDRLFRSAHITAMAEAVFGEAGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGYGL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-05-02
Deposition Author(s): Brodersen, D.E. , Henriksen, F.O.G.