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9R1D

Structure of the h3.v-h4.v variant nucleosome core particle from trypanosoma brucei

PDB DOI: 10.2210/pdb9r1d/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Synthetic Construct , Trypanosoma Brucei Brucei Treu927

Deposited: 2025-04-26
Deposition Author(s): Deak, G. , Wilson, M.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.21 Å

9r1d
Literature

Structure of the h3.v-h4.v variant nucleosome core particle from trypanosoma brucei

Deak, G. , Wilson, M.D.

Primary Citation of Related Structures: 9R1D


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 variant A 138 Synthetic Construct , Trypanosoma Brucei Brucei Treu927 AQMKKITPRPVRPKSVASRPIQSVARAPVKKVENTPPQKRHHRWRPGTVALREIRRLQSSTDFLIQRAPFRRFLREVVSNLKDSYRMSAACVDAIQEATETYITSVFMDANLCTLHANRVTLFPKDIQLALKLRGERN
Histone H3 variant E 138 Synthetic Construct , Trypanosoma Brucei Brucei Treu927 AQMKKITPRPVRPKSVASRPIQSVARAPVKKVENTPPQKRHHRWRPGTVALREIRRLQSSTDFLIQRAPFRRFLREVVSNLKDSYRMSAACVDAIQEATETYITSVFMDANLCTLHANRVTLFPKDIQLALKLRGERN
Histone H4 B 99 Synthetic Construct , Trypanosoma Brucei Brucei Treu927 AKGKRVGESKGAQKRQKKVLRDNVRGITRGSIRRLARRAGVKRISGVIYDEVRGVLKTFVESIVRDAGAYTEYSRKKTVTAAHVVFALRKRGKVLYGYD
Histone H4 F 99 Synthetic Construct , Trypanosoma Brucei Brucei Treu927 AKGKRVGESKGAQKRQKKVLRDNVRGITRGSIRRLARRAGVKRISGVIYDEVRGVLKTFVESIVRDAGAYTEYSRKKTVTAAHVVFALRKRGKVLYGYD
Histone H2A C 133 Synthetic Construct , Trypanosoma Brucei Brucei Treu927 ATPKQAVKKASKGGSSRSVKAGLIFPVGRVGTLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQTKKTKRLTPRTVTLAVRHDDDLGALLRNVTMSRGGVMPSLNKALAKKQKSGKHAKATPSV
Histone H2A G 133 Synthetic Construct , Trypanosoma Brucei Brucei Treu927 ATPKQAVKKASKGGSSRSVKAGLIFPVGRVGTLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQTKKTKRLTPRTVTLAVRHDDDLGALLRNVTMSRGGVMPSLNKALAKKQKSGKHAKATPSV
Histone H2B D 111 Synthetic Construct , Trypanosoma Brucei Brucei Treu927 ATPKSTPAKTRKEAKKTRRQRKRTWNVYVSRSLRSINSQMSMTSRTMKIVNSFVNDLFERIAAEAATIVRVNRKRTLGARELQTAVRLVLPADLAKHAMAEGTKAVSHASS
Histone H2B H 111 Synthetic Construct , Trypanosoma Brucei Brucei Treu927 ATPKSTPAKTRKEAKKTRRQRKRTWNVYVSRSLRSINSQMSMTSRTMKIVNSFVNDLFERIAAEAATIVRVNRKRTLGARELQTAVRLVLPADLAKHAMAEGTKAVSHASS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Widom 601 145 bp DNA (115-mer ordered and built) i 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
Widom 601 145 bp DNA (115-mer ordered and built) j 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-04-26
Deposition Author(s): Deak, G. , Wilson, M.D.