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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9QGP

Cryo-em structure of the plpvc1 sheath, 6-fold symmetrized (c6), in contracted state

PDB DOI: 10.2210/pdb9qgp/pdb

Classification: VIRUS LIKE PARTICLE
Organism(s): Photorhabdus Luminescens

Deposited: 2025-03-14
Deposition Author(s): Marin-Arraiza, L. , Taylor, N.M.I.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

9qgp
Literature

Cryo-em structure of the plpvc1 sheath, 6-fold symmetrized (c6), in contracted state

Marin-Arraiza, L. , Taylor, N.M.I.

Primary Citation of Related Structures: 9QGP


Proteins
Molecule Chains Sequence Length Organism Sequence
Phage tail sheath family protein 2A 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2B 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2C 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2D 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2E 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2F 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2G 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2H 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2I 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2J 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2K 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2L 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 3A 466 Photorhabdus Luminescens MPTIPTYPGVYIEEDASLNLSVNQGNTAIPVFIGLFSPKNTNLKSQVTRVNSWLDFTNLFNAGCIAPITIKSTKRASMPAPTLLENVKGDTAVVATPGISVDADNKDPTYTYKVIVNYTTSSDALKLYFQNGGGPCYILPQLDRLTQGFLDSIPELIKQALEITLIVCPEWDSGYQSKIYNSLTSSLLNAGYFLIADNQDKNTALITEVASQTATYYPAVKVSQLIQAEDSQIAVSGYEDAKTKSDEVKNLAQLKEKNPTVYQQAVQKIQAIQDEIAANGNIIPVSAVMAGIYCATDASRGVWKAPANIVLSGISDVAERLTDDEQGEMNSKGINAIRYFSHKGFVVWGARTLQNDDNWRYIPVRRLFNAAERDIKQAMQSVVFEPNSQPTWERVKSAIDNYLYSLWQQGALAGNKPQEAYFVQIGKDVTMSDDDIKQGKMIVKVGMAAVRPAEFIILQFSQQVAQ
Phage tail sheath family protein 3B 466 Photorhabdus Luminescens MPTIPTYPGVYIEEDASLNLSVNQGNTAIPVFIGLFSPKNTNLKSQVTRVNSWLDFTNLFNAGCIAPITIKSTKRASMPAPTLLENVKGDTAVVATPGISVDADNKDPTYTYKVIVNYTTSSDALKLYFQNGGGPCYILPQLDRLTQGFLDSIPELIKQALEITLIVCPEWDSGYQSKIYNSLTSSLLNAGYFLIADNQDKNTALITEVASQTATYYPAVKVSQLIQAEDSQIAVSGYEDAKTKSDEVKNLAQLKEKNPTVYQQAVQKIQAIQDEIAANGNIIPVSAVMAGIYCATDASRGVWKAPANIVLSGISDVAERLTDDEQGEMNSKGINAIRYFSHKGFVVWGARTLQNDDNWRYIPVRRLFNAAERDIKQAMQSVVFEPNSQPTWERVKSAIDNYLYSLWQQGALAGNKPQEAYFVQIGKDVTMSDDDIKQGKMIVKVGMAAVRPAEFIILQFSQQVAQ
Phage tail sheath family protein 3C 466 Photorhabdus Luminescens MPTIPTYPGVYIEEDASLNLSVNQGNTAIPVFIGLFSPKNTNLKSQVTRVNSWLDFTNLFNAGCIAPITIKSTKRASMPAPTLLENVKGDTAVVATPGISVDADNKDPTYTYKVIVNYTTSSDALKLYFQNGGGPCYILPQLDRLTQGFLDSIPELIKQALEITLIVCPEWDSGYQSKIYNSLTSSLLNAGYFLIADNQDKNTALITEVASQTATYYPAVKVSQLIQAEDSQIAVSGYEDAKTKSDEVKNLAQLKEKNPTVYQQAVQKIQAIQDEIAANGNIIPVSAVMAGIYCATDASRGVWKAPANIVLSGISDVAERLTDDEQGEMNSKGINAIRYFSHKGFVVWGARTLQNDDNWRYIPVRRLFNAAERDIKQAMQSVVFEPNSQPTWERVKSAIDNYLYSLWQQGALAGNKPQEAYFVQIGKDVTMSDDDIKQGKMIVKVGMAAVRPAEFIILQFSQQVAQ
Phage tail sheath family protein 3D 466 Photorhabdus Luminescens MPTIPTYPGVYIEEDASLNLSVNQGNTAIPVFIGLFSPKNTNLKSQVTRVNSWLDFTNLFNAGCIAPITIKSTKRASMPAPTLLENVKGDTAVVATPGISVDADNKDPTYTYKVIVNYTTSSDALKLYFQNGGGPCYILPQLDRLTQGFLDSIPELIKQALEITLIVCPEWDSGYQSKIYNSLTSSLLNAGYFLIADNQDKNTALITEVASQTATYYPAVKVSQLIQAEDSQIAVSGYEDAKTKSDEVKNLAQLKEKNPTVYQQAVQKIQAIQDEIAANGNIIPVSAVMAGIYCATDASRGVWKAPANIVLSGISDVAERLTDDEQGEMNSKGINAIRYFSHKGFVVWGARTLQNDDNWRYIPVRRLFNAAERDIKQAMQSVVFEPNSQPTWERVKSAIDNYLYSLWQQGALAGNKPQEAYFVQIGKDVTMSDDDIKQGKMIVKVGMAAVRPAEFIILQFSQQVAQ
Phage tail sheath family protein 3E 466 Photorhabdus Luminescens MPTIPTYPGVYIEEDASLNLSVNQGNTAIPVFIGLFSPKNTNLKSQVTRVNSWLDFTNLFNAGCIAPITIKSTKRASMPAPTLLENVKGDTAVVATPGISVDADNKDPTYTYKVIVNYTTSSDALKLYFQNGGGPCYILPQLDRLTQGFLDSIPELIKQALEITLIVCPEWDSGYQSKIYNSLTSSLLNAGYFLIADNQDKNTALITEVASQTATYYPAVKVSQLIQAEDSQIAVSGYEDAKTKSDEVKNLAQLKEKNPTVYQQAVQKIQAIQDEIAANGNIIPVSAVMAGIYCATDASRGVWKAPANIVLSGISDVAERLTDDEQGEMNSKGINAIRYFSHKGFVVWGARTLQNDDNWRYIPVRRLFNAAERDIKQAMQSVVFEPNSQPTWERVKSAIDNYLYSLWQQGALAGNKPQEAYFVQIGKDVTMSDDDIKQGKMIVKVGMAAVRPAEFIILQFSQQVAQ
Phage tail sheath family protein 3F 466 Photorhabdus Luminescens MPTIPTYPGVYIEEDASLNLSVNQGNTAIPVFIGLFSPKNTNLKSQVTRVNSWLDFTNLFNAGCIAPITIKSTKRASMPAPTLLENVKGDTAVVATPGISVDADNKDPTYTYKVIVNYTTSSDALKLYFQNGGGPCYILPQLDRLTQGFLDSIPELIKQALEITLIVCPEWDSGYQSKIYNSLTSSLLNAGYFLIADNQDKNTALITEVASQTATYYPAVKVSQLIQAEDSQIAVSGYEDAKTKSDEVKNLAQLKEKNPTVYQQAVQKIQAIQDEIAANGNIIPVSAVMAGIYCATDASRGVWKAPANIVLSGISDVAERLTDDEQGEMNSKGINAIRYFSHKGFVVWGARTLQNDDNWRYIPVRRLFNAAERDIKQAMQSVVFEPNSQPTWERVKSAIDNYLYSLWQQGALAGNKPQEAYFVQIGKDVTMSDDDIKQGKMIVKVGMAAVRPAEFIILQFSQQVAQ
Phage tail sheath family protein 4A 392 Photorhabdus Luminescens MEITQPSVTITENLIFPKQNDSFIGIPVFIGYTSSPVDKTAIKLHSLADFARSFPESGLMYYSVRHFFENGGQQAYVLSLGTEQQLSDFSSLITALQQAWLAQTIAAENDITLIITPDVIRFDQTEISDTQRDLWLQLWQSVLNLCKSRRGIMGLLDAPDDPTLAAKCLQQFSSADRQWGVVYWPLLKSAYQDNTQNPIVLSPTAAVAAVIQRNDNQQGVWTAPANIALSKVISPVRAYIEANALFNPDGTSLNLVRSFPGKGIRIWGCRTLENTHDSPWSYIQTRRLVSYIEAYMTQLGRAFVFEPNNAITWMKFKGQAHNWLRQLWLKGGLRGTQEDQAFEVLLGVDESMREADLRAGKMIIKIRLAVLIPAEFIELNLTFDTRTGTIPS
Phage tail sheath family protein 4B 392 Photorhabdus Luminescens MEITQPSVTITENLIFPKQNDSFIGIPVFIGYTSSPVDKTAIKLHSLADFARSFPESGLMYYSVRHFFENGGQQAYVLSLGTEQQLSDFSSLITALQQAWLAQTIAAENDITLIITPDVIRFDQTEISDTQRDLWLQLWQSVLNLCKSRRGIMGLLDAPDDPTLAAKCLQQFSSADRQWGVVYWPLLKSAYQDNTQNPIVLSPTAAVAAVIQRNDNQQGVWTAPANIALSKVISPVRAYIEANALFNPDGTSLNLVRSFPGKGIRIWGCRTLENTHDSPWSYIQTRRLVSYIEAYMTQLGRAFVFEPNNAITWMKFKGQAHNWLRQLWLKGGLRGTQEDQAFEVLLGVDESMREADLRAGKMIIKIRLAVLIPAEFIELNLTFDTRTGTIPS
Phage tail sheath family protein 4C 392 Photorhabdus Luminescens MEITQPSVTITENLIFPKQNDSFIGIPVFIGYTSSPVDKTAIKLHSLADFARSFPESGLMYYSVRHFFENGGQQAYVLSLGTEQQLSDFSSLITALQQAWLAQTIAAENDITLIITPDVIRFDQTEISDTQRDLWLQLWQSVLNLCKSRRGIMGLLDAPDDPTLAAKCLQQFSSADRQWGVVYWPLLKSAYQDNTQNPIVLSPTAAVAAVIQRNDNQQGVWTAPANIALSKVISPVRAYIEANALFNPDGTSLNLVRSFPGKGIRIWGCRTLENTHDSPWSYIQTRRLVSYIEAYMTQLGRAFVFEPNNAITWMKFKGQAHNWLRQLWLKGGLRGTQEDQAFEVLLGVDESMREADLRAGKMIIKIRLAVLIPAEFIELNLTFDTRTGTIPS
Phage tail sheath family protein 4D 392 Photorhabdus Luminescens MEITQPSVTITENLIFPKQNDSFIGIPVFIGYTSSPVDKTAIKLHSLADFARSFPESGLMYYSVRHFFENGGQQAYVLSLGTEQQLSDFSSLITALQQAWLAQTIAAENDITLIITPDVIRFDQTEISDTQRDLWLQLWQSVLNLCKSRRGIMGLLDAPDDPTLAAKCLQQFSSADRQWGVVYWPLLKSAYQDNTQNPIVLSPTAAVAAVIQRNDNQQGVWTAPANIALSKVISPVRAYIEANALFNPDGTSLNLVRSFPGKGIRIWGCRTLENTHDSPWSYIQTRRLVSYIEAYMTQLGRAFVFEPNNAITWMKFKGQAHNWLRQLWLKGGLRGTQEDQAFEVLLGVDESMREADLRAGKMIIKIRLAVLIPAEFIELNLTFDTRTGTIPS
Phage tail sheath family protein 4E 392 Photorhabdus Luminescens MEITQPSVTITENLIFPKQNDSFIGIPVFIGYTSSPVDKTAIKLHSLADFARSFPESGLMYYSVRHFFENGGQQAYVLSLGTEQQLSDFSSLITALQQAWLAQTIAAENDITLIITPDVIRFDQTEISDTQRDLWLQLWQSVLNLCKSRRGIMGLLDAPDDPTLAAKCLQQFSSADRQWGVVYWPLLKSAYQDNTQNPIVLSPTAAVAAVIQRNDNQQGVWTAPANIALSKVISPVRAYIEANALFNPDGTSLNLVRSFPGKGIRIWGCRTLENTHDSPWSYIQTRRLVSYIEAYMTQLGRAFVFEPNNAITWMKFKGQAHNWLRQLWLKGGLRGTQEDQAFEVLLGVDESMREADLRAGKMIIKIRLAVLIPAEFIELNLTFDTRTGTIPS
Phage tail sheath family protein 4F 392 Photorhabdus Luminescens MEITQPSVTITENLIFPKQNDSFIGIPVFIGYTSSPVDKTAIKLHSLADFARSFPESGLMYYSVRHFFENGGQQAYVLSLGTEQQLSDFSSLITALQQAWLAQTIAAENDITLIITPDVIRFDQTEISDTQRDLWLQLWQSVLNLCKSRRGIMGLLDAPDDPTLAAKCLQQFSSADRQWGVVYWPLLKSAYQDNTQNPIVLSPTAAVAAVIQRNDNQQGVWTAPANIALSKVISPVRAYIEANALFNPDGTSLNLVRSFPGKGIRIWGCRTLENTHDSPWSYIQTRRLVSYIEAYMTQLGRAFVFEPNNAITWMKFKGQAHNWLRQLWLKGGLRGTQEDQAFEVLLGVDESMREADLRAGKMIIKIRLAVLIPAEFIELNLTFDTRTGTIPS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-14
Deposition Author(s): Marin-Arraiza, L. , Taylor, N.M.I.