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FASTA Sequence PDB Format mmCIF Format
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9QDI

Crystal structure of bf3526 peptidase from bacteroides fragilis in complex with a peptide

PDB DOI: 10.2210/pdb9qdi/pdb

Classification: HYDROLASE
Organism(s): Bacteroides Fragilis Nctc 9343 , Synthetic Construct

Deposited: 2025-03-06
Deposition Author(s): Aguillo-Urarte, M. , Manzanares-Gomez, A. , Marquez-Monino, M.A. , Martinez Gascuena, A. , Trastoy, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.94 Å

Literature

Crystal structure of bf3526 peptidase from bacteroides fragilis in complex with a peptide

Aguillo-Urarte, M. , Manzanares-Gomez, A. , Marquez-Monino, M.A. , Martinez Gascuena, A. , Trastoy, B.

Primary Citation of Related Structures: 9QDI


Proteins
Molecule Chains Sequence Length Organism Sequence
Lipoprotein A 409 Bacteroides Fragilis Nctc 9343 , Synthetic Construct GAQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK
Lipoprotein B 409 Bacteroides Fragilis Nctc 9343 , Synthetic Construct GAQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK
Lipoprotein C 409 Bacteroides Fragilis Nctc 9343 , Synthetic Construct GAQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK
Lipoprotein D 409 Bacteroides Fragilis Nctc 9343 , Synthetic Construct GAQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK
Lipoprotein E 409 Bacteroides Fragilis Nctc 9343 , Synthetic Construct GAQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK
Lipoprotein F 409 Bacteroides Fragilis Nctc 9343 , Synthetic Construct GAQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK
Lipoprotein G 409 Bacteroides Fragilis Nctc 9343 , Synthetic Construct GAQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK
Lipoprotein H 409 Bacteroides Fragilis Nctc 9343 , Synthetic Construct GAQNFSDYFTNKTLRIDYLFTGNADKQSICLDELSELPVWAGRRHHLSELPLEGNGQIVMRDVASGKVIYTTSFSSLFQEWLETDEAKEVTKGFENTYLLPYPIKPAEVEITLRNNKREVSANLKHVVKPDDILIHKKGLTHITPHKYLLKSGNEEQCIDVAILAEGYTTSEMETFYKDAAIACEALFSHEPFQSMKNRFNIVAVASPSADSGVSAPKQGAWKHTAFGSHFDTFYSDRYLTTSRVKAINDALAGIPYEHIIILANTEQYGGGGIYNAFTLTTAHHPNFRPVVVHEFGHSFGGLADEYFYDEDVMNGLYPLNIEPWEQNITTRINFASKWEDMLTKTTPVPTPVADKAKYPIGVYEGGGYSAKGIYRPAFDCRMRTNEYPTFCPVCQRAIQRIIEFYTGK
Synthetic peptide SER-THR-PRO-PRO I 4 Bacteroides Fragilis Nctc 9343 , Synthetic Construct STPP
Synthetic peptide SER-THR-PRO-PRO J 4 Bacteroides Fragilis Nctc 9343 , Synthetic Construct STPP
Synthetic peptide SER-THR-PRO-PRO K 4 Bacteroides Fragilis Nctc 9343 , Synthetic Construct STPP
Synthetic peptide SER-THR-PRO-PRO L 4 Bacteroides Fragilis Nctc 9343 , Synthetic Construct STPP
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-03-06
Deposition Author(s): Aguillo-Urarte, M. , Manzanares-Gomez, A. , Marquez-Monino, M.A. , Martinez Gascuena, A. , Trastoy, B.