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FASTA Sequence PDB Format mmCIF Format
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9PNU

Cryo-em structure of k001-a1 fab in complex with hiv-1 459c-opt rns ds-sosip env trimer

PDB DOI: 10.2210/pdb9pnu/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2025-07-21
Deposition Author(s): Kwong, P.D. , Morano, N.C. , Shapiro, L. , Wang, S. , Zhou, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.01 Å

9pnu
Literature

Cryo-em structure of k001-a1 fab in complex with hiv-1 459c-opt rns ds-sosip env trimer

Kwong, P.D. , Morano, N.C. , Shapiro, L. , Wang, S. , Zhou, T.

Primary Citation of Related Structures: 9PNU


Proteins
Molecule Chains Sequence Length Organism Sequence
K001-A1 Fab heavy chain H 246 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQQWGEGLVKPSETLSLTCAVYGGSISGDYYWTWIRQPPGMGLEWIGYIYGDTASTNYNPSLKNRVTISKDTSKNQFSLKLDSVTAADTAVYYCARECGGQQVLHDDDYDFYDPTIGLDSWGQGVVVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
K001-A1 Fab light chain L 220 Human Immunodeficiency Virus 1 , Macaca Mulatta DIVMTQTPLSLPVTPGEPASISCRSSQSLLDSGDGNTYLDWYLQKPGQSPQPLIYEVSNRASGVPDRFSGSGSDTDFTLRIRKVEAEDVGVYYCMQYTHIPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
459C-OPT probe RnS DS-SOSIP gp41 A 179 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLLKAPEAQQHLLQLGVWGFKQLQTRVLAIERYLEVQQLLGLWGCSGKLICCTAVPWNSSWSNKSETEIWNNMTWMQWDREISNYTNTIYRLLEESQFQQEINEKDLLALDGGGLVPQQSGGLNDIFEAQKIEWHEG
459C-OPT probe RnS DS-SOSIP gp41 B 179 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLLKAPEAQQHLLQLGVWGFKQLQTRVLAIERYLEVQQLLGLWGCSGKLICCTAVPWNSSWSNKSETEIWNNMTWMQWDREISNYTNTIYRLLEESQFQQEINEKDLLALDGGGLVPQQSGGLNDIFEAQKIEWHEG
459C-OPT probe RnS DS-SOSIP gp41 F 179 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLLKAPEAQQHLLQLGVWGFKQLQTRVLAIERYLEVQQLLGLWGCSGKLICCTAVPWNSSWSNKSETEIWNNMTWMQWDREISNYTNTIYRLLEESQFQQEINEKDLLALDGGGLVPQQSGGLNDIFEAQKIEWHEG
459C-OPT probe RnS DS-SOSIP gp120 C 470 Human Immunodeficiency Virus 1 , Macaca Mulatta GPNLWVTVYYGVPVWREAKTTLFCASDAKAYDREVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNDMVDQMHEDIISLWDQSLKPCVKLTPLCVTLECTAFNSSSHTNSSIAMQEMKNCSFNMTTELRDKKKKVSALFYKLDIVPLNKNGRQYRLINCNTSTCTQICPKVSFDPIPIHYCTPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIIIRSENLTNNAKTIIVHLNESVEIVCIRPNNMTRKSIRIGPGQTFYALNDIIGDIRQPHCNISKEKWNNTLHRVWKKLVEHFPNKTIIFFDRHSGGDLEITTHSFNCGGEFFYCNTSGLFNITYNSNYTYNDTKHNGTKVITLPCRIKQIINMWQEVGRCMYAPPIAGNITCTSNITGLLLTRDGGNNSTETETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTGCKRRVVER
459C-OPT probe RnS DS-SOSIP gp120 G 470 Human Immunodeficiency Virus 1 , Macaca Mulatta GPNLWVTVYYGVPVWREAKTTLFCASDAKAYDREVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNDMVDQMHEDIISLWDQSLKPCVKLTPLCVTLECTAFNSSSHTNSSIAMQEMKNCSFNMTTELRDKKKKVSALFYKLDIVPLNKNGRQYRLINCNTSTCTQICPKVSFDPIPIHYCTPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIIIRSENLTNNAKTIIVHLNESVEIVCIRPNNMTRKSIRIGPGQTFYALNDIIGDIRQPHCNISKEKWNNTLHRVWKKLVEHFPNKTIIFFDRHSGGDLEITTHSFNCGGEFFYCNTSGLFNITYNSNYTYNDTKHNGTKVITLPCRIKQIINMWQEVGRCMYAPPIAGNITCTSNITGLLLTRDGGNNSTETETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTGCKRRVVER
459C-OPT probe RnS DS-SOSIP gp120 I 470 Human Immunodeficiency Virus 1 , Macaca Mulatta GPNLWVTVYYGVPVWREAKTTLFCASDAKAYDREVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNDMVDQMHEDIISLWDQSLKPCVKLTPLCVTLECTAFNSSSHTNSSIAMQEMKNCSFNMTTELRDKKKKVSALFYKLDIVPLNKNGRQYRLINCNTSTCTQICPKVSFDPIPIHYCTPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIIIRSENLTNNAKTIIVHLNESVEIVCIRPNNMTRKSIRIGPGQTFYALNDIIGDIRQPHCNISKEKWNNTLHRVWKKLVEHFPNKTIIFFDRHSGGDLEITTHSFNCGGEFFYCNTSGLFNITYNSNYTYNDTKHNGTKVITLPCRIKQIINMWQEVGRCMYAPPIAGNITCTSNITGLLLTRDGGNNSTETETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTGCKRRVVER
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-07-21
Deposition Author(s): Kwong, P.D. , Morano, N.C. , Shapiro, L. , Wang, S. , Zhou, T.