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FASTA Sequence PDB Format mmCIF Format
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9PNN

Cryo-em structure of j601-a6 fab in complex with hiv-1 bg505 ds-sosip env trimer

PDB DOI: 10.2210/pdb9pnn/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2025-07-21
Deposition Author(s): Kwong, P.D. , Morano, N.C. , Shapiro, L. , Wang, S. , Zhou, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

9pnn
Literature

Cryo-em structure of j601-a6 fab in complex with hiv-1 bg505 ds-sosip env trimer

Kwong, P.D. , Morano, N.C. , Shapiro, L. , Wang, S. , Zhou, T.

Primary Citation of Related Structures: 9PNN


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein BG505 DS-SOSIP gp41 B 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein BG505 DS-SOSIP gp41 A 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein BG505 DS-SOSIP gp41 F 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein BG505 DS-SOSIP gp120 G 473 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
Envelope glycoprotein BG505 DS-SOSIP gp120 C 473 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
Envelope glycoprotein BG505 DS-SOSIP gp120 I 473 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
antibody J601-A6 heavy chain H 234 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLEESGPGIVKPSETLSLTCAASRGPFSGGHFYWNWFRQPPGKGLEWIGGIYSDGDAADYNPSLESRVAISRDRSANRFSLKLISVTATDTAVYYCSSTYSWNNVWFDQWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
antibody J601-A6 heavy chain D 234 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLEESGPGIVKPSETLSLTCAASRGPFSGGHFYWNWFRQPPGKGLEWIGGIYSDGDAADYNPSLESRVAISRDRSANRFSLKLISVTATDTAVYYCSSTYSWNNVWFDQWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
antibody J601-A6 heavy chain J 234 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLEESGPGIVKPSETLSLTCAASRGPFSGGHFYWNWFRQPPGKGLEWIGGIYSDGDAADYNPSLESRVAISRDRSANRFSLKLISVTATDTAVYYCSSTYSWNNVWFDQWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
antibody J601-A6 light chain L 215 Human Immunodeficiency Virus 1 , Macaca Mulatta EDIQLTQSPSSLSASVGDRVTITCRASQDINTDLSWYYQKSGEAPKLLIYRASNLQSGAPSRFSGTGSGTEFTLTISSLQPEDFITYYCQQRYSFPITFGAGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
antibody J601-A6 light chain E 215 Human Immunodeficiency Virus 1 , Macaca Mulatta EDIQLTQSPSSLSASVGDRVTITCRASQDINTDLSWYYQKSGEAPKLLIYRASNLQSGAPSRFSGTGSGTEFTLTISSLQPEDFITYYCQQRYSFPITFGAGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
antibody J601-A6 light chain K 215 Human Immunodeficiency Virus 1 , Macaca Mulatta EDIQLTQSPSSLSASVGDRVTITCRASQDINTDLSWYYQKSGEAPKLLIYRASNLQSGAPSRFSGTGSGTEFTLTISSLQPEDFITYYCQQRYSFPITFGAGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-07-21
Deposition Author(s): Kwong, P.D. , Morano, N.C. , Shapiro, L. , Wang, S. , Zhou, T.