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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9P8U

Structure of cloa in complex with dgtp and p3dit

PDB DOI: 10.2210/pdb9p8u/pdb

Classification: HYDROLASE
Organism(s): Salmonella Enterica , Synthetic Construct

Deposited: 2025-06-23
Deposition Author(s): Fernandez, S.G. , Kranzusch, P.J. , Luder, M. , Schwede, F. , Wassarman, D.R. , Yamaguchi, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.56 Å

9p8u
Literature

Structure of cloa in complex with dgtp and p3dit

Fernandez, S.G. , Kranzusch, P.J. , Luder, M. , Schwede, F. , Wassarman, D.R. , Yamaguchi, S.

Primary Citation of Related Structures: 9P8U


Proteins
Molecule Chains Sequence Length Organism Sequence
DNTP triphosphohydrolase A 473 Salmonella Enterica , Synthetic Construct GSMHWNDLLNSNRRKPKNEKKESSQDTSKGRQQIERDYDRILFAAPTRRLADKTQVFPLDKNDSVRTRLTHSHEVANLSRGIGMRLAFELEDDVFKDVSEDICLKRDVPALLAAIGLVHDMGNPPFGAQGAKAMSEWFTKNLPEHSDNYKDKIYGDFRHFDGNSQTLRLVTKLQILNDTYGLNLTYATLASMIKYPRSSESDSSLWKKHGFFLSEKDVVQDIWNNTGLSEGVRHPFTYIMEACDDIAYSVLDAEDIIKKGFASFHDLIDFIQSNQFCKEDDVAKRVIENCKKIHADYAQQKLSPAELNDMSMQMFRVYAIAELVDAVVIAFKDNINEFLNDTCEIKDLISCSSGKNLCQALKKFDSSRGYQHRSVLKLELEGSNYIKGLMDMLWLGIKGRATGDTQYDTPFGRYVYGRISENYRRIFEQENNLPACYKEAQLLADAISGMTDSYLIALHDELRALHQYECRQR
DNTP triphosphohydrolase B 473 Salmonella Enterica , Synthetic Construct GSMHWNDLLNSNRRKPKNEKKESSQDTSKGRQQIERDYDRILFAAPTRRLADKTQVFPLDKNDSVRTRLTHSHEVANLSRGIGMRLAFELEDDVFKDVSEDICLKRDVPALLAAIGLVHDMGNPPFGAQGAKAMSEWFTKNLPEHSDNYKDKIYGDFRHFDGNSQTLRLVTKLQILNDTYGLNLTYATLASMIKYPRSSESDSSLWKKHGFFLSEKDVVQDIWNNTGLSEGVRHPFTYIMEACDDIAYSVLDAEDIIKKGFASFHDLIDFIQSNQFCKEDDVAKRVIENCKKIHADYAQQKLSPAELNDMSMQMFRVYAIAELVDAVVIAFKDNINEFLNDTCEIKDLISCSSGKNLCQALKKFDSSRGYQHRSVLKLELEGSNYIKGLMDMLWLGIKGRATGDTQYDTPFGRYVYGRISENYRRIFEQENNLPACYKEAQLLADAISGMTDSYLIALHDELRALHQYECRQR
DNTP triphosphohydrolase D 473 Salmonella Enterica , Synthetic Construct GSMHWNDLLNSNRRKPKNEKKESSQDTSKGRQQIERDYDRILFAAPTRRLADKTQVFPLDKNDSVRTRLTHSHEVANLSRGIGMRLAFELEDDVFKDVSEDICLKRDVPALLAAIGLVHDMGNPPFGAQGAKAMSEWFTKNLPEHSDNYKDKIYGDFRHFDGNSQTLRLVTKLQILNDTYGLNLTYATLASMIKYPRSSESDSSLWKKHGFFLSEKDVVQDIWNNTGLSEGVRHPFTYIMEACDDIAYSVLDAEDIIKKGFASFHDLIDFIQSNQFCKEDDVAKRVIENCKKIHADYAQQKLSPAELNDMSMQMFRVYAIAELVDAVVIAFKDNINEFLNDTCEIKDLISCSSGKNLCQALKKFDSSRGYQHRSVLKLELEGSNYIKGLMDMLWLGIKGRATGDTQYDTPFGRYVYGRISENYRRIFEQENNLPACYKEAQLLADAISGMTDSYLIALHDELRALHQYECRQR
DNTP triphosphohydrolase E 473 Salmonella Enterica , Synthetic Construct GSMHWNDLLNSNRRKPKNEKKESSQDTSKGRQQIERDYDRILFAAPTRRLADKTQVFPLDKNDSVRTRLTHSHEVANLSRGIGMRLAFELEDDVFKDVSEDICLKRDVPALLAAIGLVHDMGNPPFGAQGAKAMSEWFTKNLPEHSDNYKDKIYGDFRHFDGNSQTLRLVTKLQILNDTYGLNLTYATLASMIKYPRSSESDSSLWKKHGFFLSEKDVVQDIWNNTGLSEGVRHPFTYIMEACDDIAYSVLDAEDIIKKGFASFHDLIDFIQSNQFCKEDDVAKRVIENCKKIHADYAQQKLSPAELNDMSMQMFRVYAIAELVDAVVIAFKDNINEFLNDTCEIKDLISCSSGKNLCQALKKFDSSRGYQHRSVLKLELEGSNYIKGLMDMLWLGIKGRATGDTQYDTPFGRYVYGRISENYRRIFEQENNLPACYKEAQLLADAISGMTDSYLIALHDELRALHQYECRQR
DNTP triphosphohydrolase G 473 Salmonella Enterica , Synthetic Construct GSMHWNDLLNSNRRKPKNEKKESSQDTSKGRQQIERDYDRILFAAPTRRLADKTQVFPLDKNDSVRTRLTHSHEVANLSRGIGMRLAFELEDDVFKDVSEDICLKRDVPALLAAIGLVHDMGNPPFGAQGAKAMSEWFTKNLPEHSDNYKDKIYGDFRHFDGNSQTLRLVTKLQILNDTYGLNLTYATLASMIKYPRSSESDSSLWKKHGFFLSEKDVVQDIWNNTGLSEGVRHPFTYIMEACDDIAYSVLDAEDIIKKGFASFHDLIDFIQSNQFCKEDDVAKRVIENCKKIHADYAQQKLSPAELNDMSMQMFRVYAIAELVDAVVIAFKDNINEFLNDTCEIKDLISCSSGKNLCQALKKFDSSRGYQHRSVLKLELEGSNYIKGLMDMLWLGIKGRATGDTQYDTPFGRYVYGRISENYRRIFEQENNLPACYKEAQLLADAISGMTDSYLIALHDELRALHQYECRQR
DNTP triphosphohydrolase H 473 Salmonella Enterica , Synthetic Construct GSMHWNDLLNSNRRKPKNEKKESSQDTSKGRQQIERDYDRILFAAPTRRLADKTQVFPLDKNDSVRTRLTHSHEVANLSRGIGMRLAFELEDDVFKDVSEDICLKRDVPALLAAIGLVHDMGNPPFGAQGAKAMSEWFTKNLPEHSDNYKDKIYGDFRHFDGNSQTLRLVTKLQILNDTYGLNLTYATLASMIKYPRSSESDSSLWKKHGFFLSEKDVVQDIWNNTGLSEGVRHPFTYIMEACDDIAYSVLDAEDIIKKGFASFHDLIDFIQSNQFCKEDDVAKRVIENCKKIHADYAQQKLSPAELNDMSMQMFRVYAIAELVDAVVIAFKDNINEFLNDTCEIKDLISCSSGKNLCQALKKFDSSRGYQHRSVLKLELEGSNYIKGLMDMLWLGIKGRATGDTQYDTPFGRYVYGRISENYRRIFEQENNLPACYKEAQLLADAISGMTDSYLIALHDELRALHQYECRQR
DNTP triphosphohydrolase J 473 Salmonella Enterica , Synthetic Construct GSMHWNDLLNSNRRKPKNEKKESSQDTSKGRQQIERDYDRILFAAPTRRLADKTQVFPLDKNDSVRTRLTHSHEVANLSRGIGMRLAFELEDDVFKDVSEDICLKRDVPALLAAIGLVHDMGNPPFGAQGAKAMSEWFTKNLPEHSDNYKDKIYGDFRHFDGNSQTLRLVTKLQILNDTYGLNLTYATLASMIKYPRSSESDSSLWKKHGFFLSEKDVVQDIWNNTGLSEGVRHPFTYIMEACDDIAYSVLDAEDIIKKGFASFHDLIDFIQSNQFCKEDDVAKRVIENCKKIHADYAQQKLSPAELNDMSMQMFRVYAIAELVDAVVIAFKDNINEFLNDTCEIKDLISCSSGKNLCQALKKFDSSRGYQHRSVLKLELEGSNYIKGLMDMLWLGIKGRATGDTQYDTPFGRYVYGRISENYRRIFEQENNLPACYKEAQLLADAISGMTDSYLIALHDELRALHQYECRQR
DNTP triphosphohydrolase K 473 Salmonella Enterica , Synthetic Construct GSMHWNDLLNSNRRKPKNEKKESSQDTSKGRQQIERDYDRILFAAPTRRLADKTQVFPLDKNDSVRTRLTHSHEVANLSRGIGMRLAFELEDDVFKDVSEDICLKRDVPALLAAIGLVHDMGNPPFGAQGAKAMSEWFTKNLPEHSDNYKDKIYGDFRHFDGNSQTLRLVTKLQILNDTYGLNLTYATLASMIKYPRSSESDSSLWKKHGFFLSEKDVVQDIWNNTGLSEGVRHPFTYIMEACDDIAYSVLDAEDIIKKGFASFHDLIDFIQSNQFCKEDDVAKRVIENCKKIHADYAQQKLSPAELNDMSMQMFRVYAIAELVDAVVIAFKDNINEFLNDTCEIKDLISCSSGKNLCQALKKFDSSRGYQHRSVLKLELEGSNYIKGLMDMLWLGIKGRATGDTQYDTPFGRYVYGRISENYRRIFEQENNLPACYKEAQLLADAISGMTDSYLIALHDELRALHQYECRQR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-triphosphothymidyl-3'5'-thymidine (p3diT) m 2 NA XT
5'-triphosphothymidyl-3'5'-thymidine (p3diT) n 2 NA XT
5'-triphosphothymidyl-3'5'-thymidine (p3diT) o 2 NA XT
5'-triphosphothymidyl-3'5'-thymidine (p3diT) p 2 NA XT
5'-triphosphothymidyl-3'5'-thymidine (p3diT) q 2 NA XT
5'-triphosphothymidyl-3'5'-thymidine (p3diT) r 2 NA XT
5'-triphosphothymidyl-3'5'-thymidine (p3diT) s 2 NA XT
5'-triphosphothymidyl-3'5'-thymidine (p3diT) t 2 NA XT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-06-23
Deposition Author(s): Fernandez, S.G. , Kranzusch, P.J. , Luder, M. , Schwede, F. , Wassarman, D.R. , Yamaguchi, S.