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FASTA Sequence PDB Format mmCIF Format
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9P0E

Flavobacterium johnsoniae zam64 mutant 70s initiation complex with rpsu mrna containing shine-dalgarno sequence.

PDB DOI: 10.2210/pdb9p0e/pdb

Classification: RIBOSOME
Organism(s): Flavobacterium Johnsoniae

Deposited: 2025-06-06
Deposition Author(s): Arpin, D. , Ortega, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

9p0e
Literature

Flavobacterium johnsoniae zam64 mutant 70s initiation complex with rpsu mrna containing shine-dalgarno sequence.

Arpin, D. , Ortega, J.

Primary Citation of Related Structures: 9P0E


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
23S rRNA 1 2862 NA AAAUAAGGGCGUAUGGGGAAUGCCUAGGCUCUCAGAGGCGAUGAAGGACGUGAUAAGCUGCGAAAAGCUGCGGGGACUGGCACACACAGAUUGAUCCGCAGAUAUCCGAAUGGGGCAACCCGCUAUAUUGAAGAUAUAGCACACCGAUAGGUGGGCAAACCCGCUGAACUGAAACAUCUAAGUAGGCGGAGGAGAAGAAAACAAAAGUGAUUCCGUAAGUAGUGGCGAGCGAACGCGGAUUAGCCCAAACCAGUGCUGUUACGGCAGUGCUGGGGUUGUAGGACCACGACAUUUUAUGCAUGCAGAACCGGAAGUUACUGGAAAGUGACGCCAAAGAGGGUGAUAGCCCCGUAUGGGUAAUAAAUGUAAUAGAUAGUGGUAUCCUGAGUAGGGCGGGACACGUGAAACCCUGUCUGAAUUCGGCGGGACCAUCCGCUAAGGCUAAAUACUCCUGAGAGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGAACCGUGAAUAACGGAGUGAAAUAGAUCCUGAAACCAUACGCUUACAAGCGGUCGGAGCCCUUUCGUGGGGUGACGGCGUGCCUUUUGCAUAAUGAGCCUACGAGUUAACGCUGCUGGCAAGGAUAAGUACUUCAGGUACGGAUCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCUUUAGUCAGUAGUGUUAGACGCGAAACCGUGUGAUCUACCCAUGGGCAGGUUGAAGCUGUGGUAACACACAGUGGAGGACCGAACCGGUUGACGUUGAAAAGUCUUCGGAUGACCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCGGAAAUAGCUCGUACUCCCCGAAAUGCAUUUAGGUGCAGCGUUAGUUAUAAAGUUAUACAGAGGUAGAGCUACUGAUUGGAUGCGGGGGCUUCACCGCCCACCAAUUCCUGACAAACUCCGAAUGCUGUAUAAUGUUCACUAACAGUGAGGGCUUGGGUGCUAAGGUCCAAGUCCGAGAGGGAAAGAACCCAGACCAUCAGCUAAGGUCCCCAAAUAUAUGCUAAGUUGAAAGAACGAGGUUUGUCUGCCCAGACAGCUAGGAUGUUGGCUUGGAAGCAGCCAUUCAUUUAAAGAGUGCGUAACAGCUCACUAGUCGAGCGGACGAGCAUGGAUAAUAAUCGGGCAUAAGCAUAUUACCGAAGCUAUGGAUUUGCAAGUAAUUGCAAGUGGUAGGGGAGCAUUCUAACAGGGUUGAAGGUUUUUCGUAAGGAGGGCUGGACUGGUUAGAAAAGAAAAUGUAGGCAUAAGUAACGAUAAUGCGGGCGAGAAACCCGCACACCGAAAAACUAAGGUUUCCACAGCUAUGCUAAUCAGCUGUGGGUUAGUCUGGUCCUAAGGCGAACCCGAAAGGGACAGUCGAUGGCUAACGGGUUAAUAUUCCCGUACUACUAAUUACUGUGAUGGGGUGACGGAGUGAUGAAAGCGCCGCGAACUGACGGAAUAGUUCGUUGAAGUACCUAGCUAUAGGUCCUGUAGUAAAAUGCGCAGGAACUGGUGAAAUACGAUAGUACUCGGAGUCUUCGGACAAAGAGAUAGUGCGCCUAAGGGCUUCCAAGAAAAACCUCUAAACUUCAGGUAAUUAGUACCAGUACCGUAAACCGACACAGGUAGUUGAGGAGAGAAUCCUAAGGUGCUCGAGAUAUUCAUGGCUAAGGAAUUAGGCAAAAUAGACCUGUAACUUCGGGAGAAAGGUCGCCCUGAGCAAUCAGGGCCGCAGUGAAGAGGUCCAGGCGACUGUUUAUCAAAAACACAGGGCUCUGCAAAAUCGUAAGAUGAAGUAUAGGGCCUGACACCUGCCCGGUGCUGGAAGGUUAAGAGGAGAUGUUAUCUUCGGAGAAGCAUUGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGUGUAACGAUCUGGACACUGUCUCAGCCAUGAGCUCGGUGAAAUUGUAGUAACGGUGAAGAUGCCGUUUACCCGCAGUGGGACGAAAAGACCCUGUGCACCUUUACUAUAGCUUAGUACUGACCUUGGAUAAAUGAUGUGUAGGAUAGGUUGGAGACUAUGAAGCGGCGUCGCCAGGCGUUGUGGAGUCAUUGUUGAAAUACAACCCUUUGUUUAUCUGAGGCCUAACCUCGCUAUGCGGGGGACAGUGCUUGGUGGGUAGUUUGACUGGGGUGGUCGCCUCCAAAAGAGUAACGGAGGCUUCUAAAGGUUCCCUCAGUACGCUUGGUAACCGUGCGUAGAGUGCAAUGGCAUAAGGGAGCUUGACUGAGAGACAUACAGGUCGAUCAGGUACGAAAGUAGAGCAUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAAAGGAUAAAAGGUACGCCGGGGAUAACAGGCUGAUCUCCCCCAAGAGUUCAUAUCGACGGGGGGGUUUGGCACCUCGAUGUCGGCUCGUCACAUCCUGGGGCUGGAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGUGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUCUACUGCGGGCGUUAGAAAUUUGAGUGGAUCUGAUUCUAGUACGAGAGGACCGAAUUGGACUAACCUCUAGUGUAUCUGUUGUCCCGCCAGGGGCACCGCAGAGUAGCUACGUUGGGAAGGGAUAAGCGCUGAAAGCAUAUAAGCGCGAAACCCACCACAAGAUGAGAUUUCUUUUAAGGAUCGUGGAAGAUGACCACGUUGAUAGGCUAUAGAUGUAAAGGCAGUAAUGUCAUAGUCGAGUAGUACUAAUAAUCCG
16S rRNA 2 1520 NA UAUACGAUGAAGAGUUUGAUCCUGGCUCAGGAUGAACGCUAGCGGCAGGCUUAACACAUGCAAGUCGAGGGGUAGAAGUCUUCGGGCUUUGAGACCGGCGCACGGGUGCGUAACGCGUAUGCAAUCUGCCUUUCACAGAGGGAUAGCCCAGAGAAAUUUGGAUUAAUACCUCAUAGUAUUAUAGAGCGGCAUCACUUUAUAAUUAAAGUCACAACGGUGAAAGAUGAGCAUGCGUCCCAUUAGCUAGUUGGUAAGGUAACGGCUUACCAAGGCCACGAUGGGUAGGGGUCCUGAGAGGGAGAUCCCCCACACUGGUACUGAGACACGGACCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAUGGACGCAAGUCUGAACCAGCCAUGCCGCGUGCAGGAUGACGGUCCUAUGGAUUGUAAACUGCUUUUGUACGAGAAGAAACACUCCUAUAUAUAGGAGCUUGACGGUAUCGUAAGAAUAAGGAUCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGAUCCAAGCGUUAUCCGGAAUCACUGGGUUUAAAGGGUCCGUAGGCGGUUUAGUAAGUCAGUGGUGAAAGCCCAUCGCUCAACGGUGGAACGGCCAUUGAUACUGCUGAACUUGAAUUACUGGGAAGUAACUAGAAUAUGUAGUGUAGCGGUGAAAUGCUUAGAUAUUACAUGGAAUACCAAUUGCGAAGGCAGGUUACUACCAGUUUAUUGACGCUGAUGGACGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGGAUACUAGCUGUUGGGCGCAAGUUCAGUGGCUAAGCGAAAGUGAUAAGUAUCCCACCUGGGGAGUACGAACGCAAGUUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAACAUGUGGUUUAAUUCGAUGAUACGCGAGGAACCUUACCAAGGCUUAAAUGCAGACUGACCGAUUUGGAAACAGAUCUUAUCGCAAGACAGUUUACAAGGUGCUGCAUGGUUGUCGUCAGCUCGUGCCGUGAGGUGUCAGGUUAAGUCCUAUAACGAGCGCAACCCCUGUUGUUAGUUGCCAGCGAGUGAUGUCGGGAACUCUAACAAGACUGCCAGUGCAAACUGUGAGGAAGGUGGGGAUGACGUCAAAUCAUCACGGCCCUUACGCCUUGGGCUACACACGUGCUACAAUGGCCGGUACAGAGAGCAGCCACUGGGUGACCAGGAGCGAAUCUAUAAAGCCGGUCACAGUUCGGAUCGGAGUCUGCAACUCGACUCCGUGAAGCUGGAAUCGCUAGUAAUCGGAUAUCAGCCAUGAUCCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCAAGCCAUGGAAGCUGGGGGUGCCUGAAGUCGGUGACCGCAAGGAGCUGCCUAGGGUAAAACUGGUAACUAGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAACACCUCCUUUCU
5S rRNA 3 111 NA UUAAGGUGGUUAUUGCGGCGGGGCUCACCUCUUCCCAUCCCGAACAGAGAAGUUAAGCCCGCUUGCGCAGAUGGUACUGCAGUUUUGUGGGAGAGUAUGUCGUCGCCUUUC
fMet-tRNA a 77 NA CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
rpsU mRNA 6 23 NA CGAGAGGAGGUGUCUAUAUUAUG

Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L34 D 53 Flavobacterium Johnsoniae MSKRTFQPSKRKRRNKHGFMDRMASANGRKVLARRRAKGRHKLTVSSEPRHKK
50S ribosomal protein L35 E 65 Flavobacterium Johnsoniae MPKMKTKSSAKKRFKVTGSGKIKRKHAFKSHILTKKSKKRKLALTHSALVHKTDEKSIKQQLRII
50S ribosomal protein L36 F 38 Flavobacterium Johnsoniae MKVRASVKKRSAECIIVRRKGRLYVINKKNPRFKQRQG
50S ribosomal protein L9 G 146 Flavobacterium Johnsoniae MEIILKQDVQNLGFKDDVVSVKPGYGRNFLIPQGFATLATPSAKKVLAENLKQRAHKEAKIVADAKALAETLKALEIKLTAKAGGEKLFGSITNIDIAEALEKSGNAIDRKFITSGVVKRIGKYNATVRLHRDVIVELPYEIVAEK
30S ribosomal protein S5 J 173 Flavobacterium Johnsoniae MSKYKNVELVKPSGLELKDRLVSVNRVTKVTKGGRAFGFSAIVVVGDENGVVGHGLGKSKDVSEAIAKAVEDAKKNLVRIPLNGQSVPHEQKGKFGGARVFLIPASHGTGVIAGGAVRSVLESVGIHDVLSKSQGSSNPHNVVKATFDALLQMRSAHTVAKQRGVSLEKVFKG
30S ribosomal protein S6 K 113 Flavobacterium Johnsoniae MNHYETVFILNPVLSEVQVKETVTKFEEFLTSRGAEMVSKEDWGLKKMAYEIQNKKSGFYHLFEFKVAGEVLIAFETEFRRDERVMRFLTVSLDKHAISWAERRRAKLKSTKA
30S ribosomal protein S7 L 158 Flavobacterium Johnsoniae MRKRAAKKRPLLPDPRFNDQLVTRFVNNLMWDGKKSTAFKVFYDAIDIIETKKQNDEKTSLEIWKDALTNVMPHVEVRSRRVGGATFQIPMQIRPDRKISMAMKWLILYARRRNEKSMAQRLASECLAAAKEEGAAVKKRMDTHKMAEANKAFSHFRF
30S ribosomal protein S8 M 132 Flavobacterium Johnsoniae MYTDPIADYLTRVRNAVAANHKVVEIPASNLKKEITKILFDQGYILSYKFEQNTVQGSIKIALKYDKDTKEPVIKDIQRISKPGLRKYAGAAKLPRILNGLGIAIVSTSKGLMTGKQAKQLNVGGEVICYVY
30S ribosomal protein S9 N 128 Flavobacterium Johnsoniae MGVIHKIGRRKTAVARVYVSEGTGNITVNKKEFATYFPTATLQYKVLQPLSMTENVNNFDVKVNVYGGGTTGQAEAVRMALARVMCEVNAENRGILKPEGLLTRDPRMVERKKFGQKKARKRFQFSKR
30S ribosomal protein S10 O 101 Flavobacterium Johnsoniae MSQKIRIKLKSYDHMLVDKSAEKIVKTVKTTGAVVTGPIPLPTHKKLFTVLRSPHVNKKAREQFEVMSYKRLIDIYSSSSKTIDALMKLELPSGVEVEIKV
30S ribosomal protein S11 P 127 Flavobacterium Johnsoniae MAKATAKKRKVIVESTGEAHISSTFNNIIISLTNKKGEVIAWSSAGKMGFRGSKKNTPYAAQMAAEDCSKVALEAGLKKVKVYVKGPGNGRESAIRSIHNGGIEVTEIIDVTPMPHNGCRPPKRRRV
30S ribosomal protein S12 Q 127 Flavobacterium Johnsoniae MPTIQQLVRTGRTQITKKSKSVALDSCPQRRGVCTRVYTTTPKKPNSAMRKVARVRLTNGNEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTSGVAGRTQRRSKYGAKRPKEAKK
30S ribosomal protein S13 R 124 Flavobacterium Johnsoniae MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKTVANKKKATK
30S ribosomal protein S14 S 89 Flavobacterium Johnsoniae MAKESMKAREVKREKTVAKYAEKRKALLEAGDYEGLQRLPKNASPVRLHNRCKLTGRPRGYIRQFGISRVTFREMANNGLIPGVKKASW
30S ribosomal protein S15 T 88 Flavobacterium Johnsoniae MYLTKEKKEEIFAQHGDAKNTGKAEGQIALFTYRISHLTEHLKKNRHDYNTERSLVLLVGKRRALLDYLKRKDINRYREIIKVLNIRK
30S ribosomal protein S16 U 188 Flavobacterium Johnsoniae MSVKIRLQRHGKKGKPFYWVVAADARSKRDGKYLEKIGTYNPNTNPATVELNLDSIVKWLHQGAQPTDTARAILSYKGALLKHHLDGGVRKGALTQEQADAKLTAWLEAKAGKVDAKKDGLSKAQADAKAKALKAEKEVNDKRIAAAAKAEADAIAAASATEEAATEEVAEAAEEAPAAEENNETTEA
30S ribosomal protein S17 V 86 Flavobacterium Johnsoniae MEEKRNLRKERIGVVTSNKMDKSIVISEVRKVKHPLYGKFVLKTKKYVAHDETNDCNIGDTVRISETRPLSKTKCWRLVEILERAK
30S ribosomal protein S18 W 98 Flavobacterium Johnsoniae MSTIEQSAKGKKDGDIRYLTPLNIETNKTKKYCRFKKSGIKYIDYKDADFLLKFVNEQGKILPRRLTGTSLKYQRKVSVAVKRARHLALMPYVADLLK
30S ribosomal protein S19 X 92 Flavobacterium Johnsoniae MARSLKKGPFVHYKLDKKVQENVESGKNSVVKTWSRASMITPDFVGQTIAVHNGRQFVPVYVTENMVGHKLGEFSPTRSFRGHAGAKNKGKK
30S ribosomal protein S20 Y 83 Flavobacterium Johnsoniae MANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAKKNIIHDNKASNLKSKLTKHVAKL
50S ribosomal protein L30 Z 60 Flavobacterium Johnsoniae MAKLLVKQVRSKINCPLSQKRGLEALGLRKLGQVVEHESNPAILGMINKVKHLVSVEEAK
50S ribosomal protein L2 B 274 Flavobacterium Johnsoniae MSVRKLKPITPGQRFRVVNGYDAITTDKPERSLISPIKNSGGRNSQGKMTMRYTGGGHKQRYRIIDFKRTKDGIPATVKSIEYDPNRTAFIALLAYADGEKTYIIAQNGLKVGQKLVSGPESQPEIGNTLPLSRIPLGTVISCIELRPGQGAVIARSAGTFAQLMARDGKYATIKMPSGETRLILLTCSATIGEVSNSDHQLVVSGKAGRTRWLGRRPRTRPVAMNPVDHPMGGGEGRSSGGHPRSRNGLPAKGYRTRSKKNPSNKYIVERRKK
50S ribosomal protein L3 C 205 Flavobacterium Johnsoniae MSGLIGKKIGMTSIFDENGKNIPCTVIEAGPCVVTQVRTNEVDGYEALQLGFDDKNEKHSTKAALGHFKKAGTVAKKKVVEFQDFAAAQALGDLIDVSIFEEGEFVDVQGVSKGKGFQGVVKRHGFGGVGQATHGQHQRLRAPGSVGASSYPSRVFKGMRMAGRMGGDNVKVQNLRVLKVVAEKNLLVVKGCIPGHKNSYVIIQK
30S ribosomal protein S3 H 252 Flavobacterium Johnsoniae MGQKTNPIGNRLGIIRGWDSNWYGGNDYGDKLAEDHKIRKYIHARLSKASVSKVIIERTLKLVTVTITTARPGIIIGKGGQEVDKLKEELKKVTDKEVQINIFEIKRPELDAYLVATSIARQIESRISYRRAIKMAIAASMRMNAEGIKVLISGRLNGAEMARSEGFKEGRIPLSTFRADIDYALAEAHTTYGRMGIKVWIMKGEVYGKRDLSPLAGMDKKQSGTGGGKGGDAPRGKSNFNKGGKPDARKRK
30S ribosomal protein S4 I 201 Flavobacterium Johnsoniae MARYTGPKTKIARKFGEAIFGDDKSFEKRNYPPGQHGMAKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATKGVTGEVLLQLCEARLDNVVFRMGIAPSRRGARQIVSHRHITVNGEVVNIPSYHLKPGDKVAVREKSKSLEAIERSLSNSSHVYEWITWNNDLKEGTFVSVPARLQIPENIKEQLIVELYNK
50S ribosomal protein L38 4 50 Flavobacterium Johnsoniae MAKKTVASLQTSSKRLSKAIKMVKSPKTGAYIFVESIMAPELVDEFLKKK
30S ribosomal protein S22 5 30 Flavobacterium Johnsoniae MPSGKKRKRHKVATHKRKKRARANRHKKKK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-06-06
Deposition Author(s): Arpin, D. , Ortega, J.