9OZN
Flavobacterium johnsoniae 70s initiation complex with rpsu mrna containing shine-dalgarno sequence. state 1.
PDB DOI: 10.2210/pdb9ozn/pdb
Classification: RIBOSOME Organism(s): Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101
Deposited: 2025-06-05 Deposition Author(s): Arpin, D. , Ortega, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
Flavobacterium johnsoniae 70s initiation complex with rpsu mrna containing shine-dalgarno sequence. state 1.
Primary Citation of Related Structures: 9OZN
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5S rRNA | 3 | 111 | NA | UUAAGGUGGUUAUUGCGGCGGGGCUCACCUCUUCCCAUCCCGAACAGAGAAGUUAAGCCCGCUUGCGCAGAUGGUACUGCAGUUUUGUGGGAGAGUAUGUCGUCGCCUUUC |
| fMet-tRNA | a | 77 | NA | CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
| rpsU mRNA | 6 | 6 | NA | AUUAUG |
| 23S rRNA | 1 | 2862 | NA | AAAUAAGGGCGUAUGGGGAAUGCCUAGGCUCUCAGAGGCGAUGAAGGACGUGAUAAGCUGCGAAAAGCUGCGGGGACUGGCACACACAGAUUGAUCCGCAGAUAUCCGAAUGGGGCAACCCGCUAUAUUGAAGAUAUAGCACACCGAUAGGUGGGCAAACCCGCUGAACUGAAACAUCUAAGUAGGCGGAGGAGAAGAAAACAAAAGUGAUUCCGUAAGUAGUGGCGAGCGAACGCGGAUUAGCCCAAACCAGUGCUGUUACGGCAGUGCUGGGGUUGUAGGACCACGACAUUUUAUGCAUGCAGAACCGGAAGUUACUGGAAAGUGACGCCAAAGAGGGUGAUAGCCCCGUAUGGGUAAUAAAUGUAAUAGAUAGUGGUAUCCUGAGUAGGGCGGGACACGUGAAACCCUGUCUGAAUUCGGCGGGACCAUCCGCUAAGGCUAAAUACUCCUGAGAGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGAACCGUGAAUAACGGAGUGAAAUAGAUCCUGAAACCAUACGCUUACAAGCGGUCGGAGCCCUUUCGUGGGGUGACGGCGUGCCUUUUGCAUAAUGAGCCUACGAGUUAACGCUGCUGGCAAGGAUAAGUACUUCAGGUACGGAUCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCUUUAGUCAGUAGUGUUAGACGCGAAACCGUGUGAUCUACCCAUGGGCAGGUUGAAGCUGUGGUAACACACAGUGGAGGACCGAACCGGUUGACGUUGAAAAGUCUUCGGAUGACCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCGGAAAUAGCUCGUACUCCCCGAAAUGCAUUUAGGUGCAGCGUUAGUUAUAAAGUUAUACAGAGGUAGAGCUACUGAUUGGAUGCGGGGGCUUCACCGCCCACCAAUUCCUGACAAACUCCGAAUGCUGUAUAAUGUUCACUAACAGUGAGGGCUUGGGUGCUAAGGUCCAAGUCCGAGAGGGAAAGAACCCAGACCAUCAGCUAAGGUCCCCAAAUAUAUGCUAAGUUGAAAGAACGAGGUUUGUCUGCCCAGACAGCUAGGAUGUUGGCUUGGAAGCAGCCAUUCAUUUAAAGAGUGCGUAACAGCUCACUAGUCGAGCGGACGAGCAUGGAUAAUAAUCGGGCAUAAGCAUAUUACCGAAGCUAUGGAUUUGCAAGUAAUUGCAAGUGGUAGGGGAGCAUUCUAACAGGGUUGAAGGUUUUUCGUAAGGAGGGCUGGACUGGUUAGAAAAGAAAAUGUAGGCAUAAGUAACGAUAAUGCGGGCGAGAAACCCGCACACCGAAAAACUAAGGUUUCCACAGCUAUGCUAAUCAGCUGUGGGUUAGUCUGGUCCUAAGGCGAACCCGAAAGGGACAGUCGAUGGCUAACGGGUUAAUAUUCCCGUACUACUAAUUACUGUGAUGGGGUGACGGAGUGAUGAAAGCGCCGCGAACUGACGGAAUAGUUCGUUGAAGUACCUAGCUAUAGGUCCUGUAGUAAAAUGCGCAGGAACUGGUGAAAUACGAUAGUACUCGGAGUCUUCGGACAAAGAGAUAGUGCGCCUAAGGGCUUCCAAGAAAAACCUCUAAACUUCAGGUAAUUAGUACCAGUACCGUAAACCGACACAGGUAGUUGAGGAGAGAAUCCUAAGGUGCUCGAGAUAUUCAUGGCUAAGGAAUUAGGCAAAAUAGACCUGUAACUUCGGGAGAAAGGUCGCCCUGAGCAAUCAGGGCCGCAGUGAAGAGGUCCAGGCGACUGUUUAUCAAAAACACAGGGCUCUGCAAAAUCGUAAGAUGAAGUAUAGGGCCUGACACCUGCCCGGUGCUGGAAGGUUAAGAGGAGAUGUUAUCUUCGGAGAAGCAUUGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGUGUAACGAUCUGGACACUGUCUCAGCCAUGAGCUCGGUGAAAUUGUAGUAACGGUGAAGAUGCCGUUUACCCGCAGUGGGACGAAAAGACCCUGUGCACCUUUACUAUAGCUUAGUACUGACCUUGGAUAAAUGAUGUGUAGGAUAGGUUGGAGACUAUGAAGCGGCGUCGCCAGGCGUUGUGGAGUCAUUGUUGAAAUACAACCCUUUGUUUAUCUGAGGCCUAACCUCGCUAUGCGGGGGACAGUGCUUGGUGGGUAGUUUGACUGGGGUGGUCGCCUCCAAAAGAGUAACGGAGGCUUCUAAAGGUUCCCUCAGUACGCUUGGUAACCGUGCGUAGAGUGCAAUGGCAUAAGGGAGCUUGACUGAGAGACAUACAGGUCGAUCAGGUACGAAAGUAGAGCAUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAAAGGAUAAAAGGUACGCCGGGGAUAACAGGCUGAUCUCCCCCAAGAGUUCAUAUCGACGGGGGGGUUUGGCACCUCGAUGUCGGCUCGUCACAUCCUGGGGCUGGAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGUGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUCUACUGCGGGCGUUAGAAAUUUGAGUGGAUCUGAUUCUAGUACGAGAGGACCGAAUUGGACUAACCUCUAGUGUAUCUGUUGUCCCGCCAGGGGCACCGCAGAGUAGCUACGUUGGGAAGGGAUAAGCGCUGAAAGCAUAUAAGCGCGAAACCCACCACAAGAUGAGAUUUCUUUUAAGGAUCGUGGAAGAUGACCACGUUGAUAGGCUAUAGAUGUAAAGGCAGUAAUGUCAUAGUCGAGUAGUACUAAUAAUCCG |
| 16S rRNA | 2 | 1520 | NA | UAUACGAUGAAGAGUUUGAUCCUGGCUCAGGAUGAACGCUAGCGGCAGGCUUAACACAUGCAAGUCGAGGGGUAGAAGUCUUCGGGCUUUGAGACCGGCGCACGGGUGCGUAACGCGUAUGCAAUCUGCCUUUCACAGAGGGAUAGCCCAGAGAAAUUUGGAUUAAUACCUCAUAGUAUUAUAGAGCGGCAUCACUUUAUAAUUAAAGUCACAACGGUGAAAGAUGAGCAUGCGUCCCAUUAGCUAGUUGGUAAGGUAACGGCUUACCAAGGCCACGAUGGGUAGGGGUCCUGAGAGGGAGAUCCCCCACACUGGUACUGAGACACGGACCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAUGGACGCAAGUCUGAACCAGCCAUGCCGCGUGCAGGAUGACGGUCCUAUGGAUUGUAAACUGCUUUUGUACGAGAAGAAACACUCCUAUAUAUAGGAGCUUGACGGUAUCGUAAGAAUAAGGAUCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGAUCCAAGCGUUAUCCGGAAUCACUGGGUUUAAAGGGUCCGUAGGCGGUUUAGUAAGUCAGUGGUGAAAGCCCAUCGCUCAACGGUGGAACGGCCAUUGAUACUGCUGAACUUGAAUUACUGGGAAGUAACUAGAAUAUGUAGUGUAGCGGUGAAAUGCUUAGAUAUUACAUGGAAUACCAAUUGCGAAGGCAGGUUACUACCAGUUUAUUGACGCUGAUGGACGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGGAUACUAGCUGUUGGGCGCAAGUUCAGUGGCUAAGCGAAAGUGAUAAGUAUCCCACCUGGGGAGUACGAACGCAAGUUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAACAUGUGGUUUAAUUCGAUGAUACGCGAGGAACCUUACCAAGGCUUAAAUGCAGACUGACCGAUUUGGAAACAGAUCUUAUCGCAAGACAGUUUACAAGGUGCUGCAUGGUUGUCGUCAGCUCGUGCCGUGAGGUGUCAGGUUAAGUCCUAUAACGAGCGCAACCCCUGUUGUUAGUUGCCAGCGAGUGAUGUCGGGAACUCUAACAAGACUGCCAGUGCAAACUGUGAGGAAGGUGGGGAUGACGUCAAAUCAUCACGGCCCUUACGCCUUGGGCUACACACGUGCUACAAUGGCCGGUACAGAGAGCAGCCACUGGGUGACCAGGAGCGAAUCUAUAAAGCCGGUCACAGUUCGGAUCGGAGUCUGCAACUCGACUCCGUGAAGCUGGAAUCGCUAGUAAUCGGAUAUCAGCCAUGAUCCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCAAGCCAUGGAAGCUGGGGGUGCCUGAAGUCGGUGACCGCAAGGAGCUGCCUAGGGUAAAACUGGUAACUAGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAACACCUCCUUUCU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L36 | F | 38 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MKVRASVKKRSAECIIVRRKGRLYVINKKNPRFKQRQG |
| 50S ribosomal protein L9 | G | 146 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MEIILKQDVQNLGFKDDVVSVKPGYGRNFLIPQGFATLATPSAKKVLAENLKQRAHKEAKIVADAKALAETLKALEIKLTAKAGGEKLFGSITNIDIAEALEKSGNAIDRKFITSGVVKRIGKYNATVRLHRDVIVELPYEIVAEK |
| 30S ribosomal protein S3 | H | 252 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MGQKTNPIGNRLGIIRGWDSNWYGGNDYGDKLAEDHKIRKYIHARLSKASVSKVIIERTLKLVTVTITTARPGIIIGKGGQEVDKLKEELKKVTDKEVQINIFEIKRPELDAYLVATSIARQIESRISYRRAIKMAIAASMRMNAEGIKVLISGRLNGAEMARSEGFKEGRIPLSTFRADIDYALAEAHTTYGRMGIKVWIMKGEVYGKRDLSPLAGMDKKQSGTGGGKGGDAPRGKSNFNKGGKPDARKRK |
| 30S ribosomal protein S5 | J | 173 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MSKYKNVELVKPSGLELKDRLVSVNRVTKVTKGGRAFGFSAIVVVGDENGVVGHGLGKSKDVSEAIAKAVEDAKKNLVRIPLNGQSVPHEQKGKFGGARVFLIPASHGTGVIAGGAVRSVLESVGIHDVLSKSQGSSNPHNVVKATFDALLQMRSAHTVAKQRGVSLEKVFKG |
| 30S ribosomal protein S6 | K | 113 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MNHYETVFILNPVLSEVQVKETVTKFEEFLTSRGAEMVSKEDWGLKKMAYEIQNKKSGFYHLFEFKVAGEVLIAFETEFRRDERVMRFLTVSLDKHAISWAERRRAKLKSTKA |
| 30S ribosomal protein S7 | L | 158 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MRKRAAKKRPLLPDPRFNDQLVTRFVNNLMWDGKKSTAFKVFYDAIDIIETKKQNDEKTSLEIWKDALTNVMPHVEVRSRRVGGATFQIPMQIRPDRKISMAMKWLILYARRRNEKSMAQRLASECLAAAKEEGAAVKKRMDTHKMAEANKAFSHFRF |
| 30S ribosomal protein S8 | M | 132 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MYTDPIADYLTRVRNAVAANHKVVEIPASNLKKEITKILFDQGYILSYKFEQNTVQGSIKIALKYDKDTKEPVIKDIQRISKPGLRKYAGAAKLPRILNGLGIAIVSTSKGLMTGKQAKQLNVGGEVICYVY |
| 30S ribosomal protein S9 | N | 128 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MGVIHKIGRRKTAVARVYVSEGTGNITVNKKEFATYFPTATLQYKVLQPLSMTENVNNFDVKVNVYGGGTTGQAEAVRMALARVMCEVNAENRGILKPEGLLTRDPRMVERKKFGQKKARKRFQFSKR |
| 30S ribosomal protein S10 | O | 101 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MSQKIRIKLKSYDHMLVDKSAEKIVKTVKTTGAVVTGPIPLPTHKKLFTVLRSPHVNKKAREQFEVMSYKRLIDIYSSSSKTIDALMKLELPSGVEVEIKV |
| 30S ribosomal protein S11 | P | 127 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MAKATAKKRKVIVESTGEAHISSTFNNIIISLTNKKGEVIAWSSAGKMGFRGSKKNTPYAAQMAAEDCSKVALEAGLKKVKVYVKGPGNGRESAIRSIHNGGIEVTEIIDVTPMPHNGCRPPKRRRV |
| 50S ribosomal protein L38 | 4 | 50 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MAKKTVASLQTSSKRLSKAIKMVKSPKTGAYIFVESIMAPELVDEFLKKK |
| 30S ribosomal protein S12 | Q | 127 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MPTIQQLVRTGRTQITKKSKSVALDSCPQRRGVCTRVYTTTPKKPNSAMRKVARVRLTNGNEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTSGVAGRTQRRSKYGAKRPKEAKK |
| 30S ribosomal protein S13 | R | 124 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKTVANKKKATK |
| 30S ribosomal protein S14 | S | 89 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MAKESMKAREVKREKTVAKYAEKRKALLEAGDYEGLQRLPKNASPVRLHNRCKLTGRPRGYIRQFGISRVTFREMANNGLIPGVKKASW |
| 30S ribosomal protein S15 | T | 88 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MYLTKEKKEEIFAQHGDAKNTGKAEGQIALFTYRISHLTEHLKKNRHDYNTERSLVLLVGKRRALLDYLKRKDINRYREIIKVLNIRK |
| 30S ribosomal protein S16 | U | 188 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MSVKIRLQRHGKKGKPFYWVVAADARSKRDGKYLEKIGTYNPNTNPATVELNLDSIVKWLHQGAQPTDTARAILSYKGALLKHHLDGGVRKGALTQEQADAKLTAWLEAKAGKVDAKKDGLSKAQADAKAKALKAEKEVNDKRIAAAAKAEADAIAAASATEEAATEEVAEAAEEAPAAEENNETTEA |
| 30S ribosomal protein S17 | V | 86 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MEEKRNLRKERIGVVTSNKMDKSIVISEVRKVKHPLYGKFVLKTKKYVAHDETNDCNIGDTVRISETRPLSKTKCWRLVEILERAK |
| 30S ribosomal protein S18 | W | 98 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MSTIEQSAKGKKDGDIRYLTPLNIETNKTKKYCRFKKSGIKYIDYKDADFLLKFVNEQGKILPRRLTGTSLKYQRKVSVAVKRARHLALMPYVADLLK |
| 30S ribosomal protein S19 | X | 92 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MARSLKKGPFVHYKLDKKVQENVESGKNSVVKTWSRASMITPDFVGQTIAVHNGRQFVPVYVTENMVGHKLGEFSPTRSFRGHAGAKNKGKK |
| 30S ribosomal protein S20 | Y | 83 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAKKNIIHDNKASNLKSKLTKHVAKL |
| 30S ribosomal protein S21 | Z | 64 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MLIIPIKDGENIDRALKRYKRKFDKTGTVRQLRARTAFIKPSVVKRAQIQKAAYIQTLKDSLES |
| 30S ribosomal protein S22 | 5 | 30 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MPSGKKRKRHKVATHKRKKRARANRHKKKK |
| 50S ribosomal protein L2 | B | 274 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MSVRKLKPITPGQRFRVVNGYDAITTDKPERSLISPIKNSGGRNSQGKMTMRYTGGGHKQRYRIIDFKRTKDGIPATVKSIEYDPNRTAFIALLAYADGEKTYIIAQNGLKVGQKLVSGPESQPEIGNTLPLSRIPLGTVISCIELRPGQGAVIARSAGTFAQLMARDGKYATIKMPSGETRLILLTCSATIGEVSNSDHQLVVSGKAGRTRWLGRRPRTRPVAMNPVDHPMGGGEGRSSGGHPRSRNGLPAKGYRTRSKKNPSNKYIVERRKK |
| 50S ribosomal protein L3 | C | 205 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MSGLIGKKIGMTSIFDENGKNIPCTVIEAGPCVVTQVRTNEVDGYEALQLGFDDKNEKHSTKAALGHFKKAGTVAKKKVVEFQDFAAAQALGDLIDVSIFEEGEFVDVQGVSKGKGFQGVVKRHGFGGVGQATHGQHQRLRAPGSVGASSYPSRVFKGMRMAGRMGGDNVKVQNLRVLKVVAEKNLLVVKGCIPGHKNSYVIIQK |
| 50S ribosomal protein L4 | D | 209 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MEVKVLDFNGKDTGRKVQLSDSVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEVTGSTRKIKKQKGTGTARAGSVKNPLFKGGGTVFGPRPRSYSFKLNKNLKRLARKSAFSIKAKESNIIVLEDFNFEAPNTKNFINVLKALGLENKKSLFVLGESNKNVYLSSRNLKASNVVTSSELSTYAILNTNNLVLLEGSLELIEENLSK |
| 50S ribosomal protein L5 | E | 183 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MAYTPRLKEEYKSRVISALKEEFGYTNVMQVPKLEKIVLSRGVGAAVSDKKLIDYAVDELTKITGQKAVITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGMDITFVTTAKTDKEAKSLLAELGLPFKKN |
| 30S ribosomal protein S4 | I | 201 | Flavobacterium Johnsoniae , Flavobacterium Johnsoniae Uw101 | MARYTGPKTKIARKFGEAIFGDDKSFEKRNYPPGQHGMAKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATKGVTGEVLLQLCEARLDNVVFRMGIAPSRRGARQIVSHRHITVNGEVVNIPSYHLKPGDKVAVREKSKSLEAIERSLSNSSHVYEWITWNNDLKEGTFVSVPARLQIPENIKEQLIVELYNK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-06-05 Deposition Author(s): Arpin, D. , Ortega, J.