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9OOM

Cryo-em structure of vaccine-elicited antibody t6_p_h03 in complex with hiv env trimer q23-apex-gt1

PDB DOI: 10.2210/pdb9oom/pdb

Classification: VIRAL PROTEIN
Organism(s): Human Immunodeficiency Virus Type 1 , Mus Musculus

Deposited: 2025-05-16
Deposition Author(s): Kwong, P.D. , Roark, R.S. , Shapiro, L.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Literature

Cryo-em structure of vaccine-elicited antibody t6_p_h03 in complex with hiv env trimer q23-apex-gt1

Kwong, P.D. , Roark, R.S. , Shapiro, L.S.

Primary Citation of Related Structures: 9OOM


Proteins
Molecule Chains Sequence Length Organism Sequence
T6_P_H03 heavy chain H 235 Human Immunodeficiency Virus Type 1 , Mus Musculus EVQLVESGGGLAKPGGSLRLSCAASGFTFSNYWMNWVRQTPGKGLEWISGINSGGGSRSYADSVMGRFIISRDNSKNTLSLQMNSLRAEDTAVYYCAKVDDDDYGYFDTVPGDLKKYYLKYWGRGVLVTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG
T6_P_H03 heavy chain I 235 Human Immunodeficiency Virus Type 1 , Mus Musculus EVQLVESGGGLAKPGGSLRLSCAASGFTFSNYWMNWVRQTPGKGLEWISGINSGGGSRSYADSVMGRFIISRDNSKNTLSLQMNSLRAEDTAVYYCAKVDDDDYGYFDTVPGDLKKYYLKYWGRGVLVTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG
T6_P_H03 heavy chain J 235 Human Immunodeficiency Virus Type 1 , Mus Musculus EVQLVESGGGLAKPGGSLRLSCAASGFTFSNYWMNWVRQTPGKGLEWISGINSGGGSRSYADSVMGRFIISRDNSKNTLSLQMNSLRAEDTAVYYCAKVDDDDYGYFDTVPGDLKKYYLKYWGRGVLVTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG
T6_P_H03 light chain L 214 Human Immunodeficiency Virus Type 1 , Mus Musculus DIQMTQSPSSLSASVGDKVTITCQASQSISSWLAWYQQKPGKAPKPLIYKASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSAPFSFGQGTEVEIKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
T6_P_H03 light chain M 214 Human Immunodeficiency Virus Type 1 , Mus Musculus DIQMTQSPSSLSASVGDKVTITCQASQSISSWLAWYQQKPGKAPKPLIYKASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSAPFSFGQGTEVEIKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
T6_P_H03 light chain N 214 Human Immunodeficiency Virus Type 1 , Mus Musculus DIQMTQSPSSLSASVGDKVTITCQASQSISSWLAWYQQKPGKAPKPLIYKASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSAPFSFGQGTEVEIKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
HIV Env gp120 B 503 Human Immunodeficiency Virus Type 1 , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREELKNCSFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVE
HIV Env gp120 D 503 Human Immunodeficiency Virus Type 1 , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREELKNCSFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVE
HIV Env gp120 F 503 Human Immunodeficiency Virus Type 1 , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREELKNCSFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVE
HIV Env gp41 ectodomain C 153 Human Immunodeficiency Virus Type 1 , Mus Musculus AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD
HIV Env gp41 ectodomain E 153 Human Immunodeficiency Virus Type 1 , Mus Musculus AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD
HIV Env gp41 ectodomain G 153 Human Immunodeficiency Virus Type 1 , Mus Musculus AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-16
Deposition Author(s): Kwong, P.D. , Roark, R.S. , Shapiro, L.S.