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9OOG

Cryo-em structure of vaccine-elicited antibody t3_nb_g05 in complex with hiv env trimer q23-apex-gt1.n187s

PDB DOI: 10.2210/pdb9oog/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Mus Musculus

Deposited: 2025-05-15
Deposition Author(s): Kwong, P.D. , Roark, R.S. , Shapiro, L.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Literature

Cryo-em structure of vaccine-elicited antibody t3_nb_g05 in complex with hiv env trimer q23-apex-gt1.n187s

Kwong, P.D. , Roark, R.S. , Shapiro, L.S.

Primary Citation of Related Structures: 9OOG


Proteins
Molecule Chains Sequence Length Organism Sequence
T3_NB_G05 heavy chain H 235 Homo Sapiens , Mus Musculus EVHLVESGGGLATPGGSLRLSCAASGFTFSNYWMNWVRQTPGKGLEWIASINSAGGARDYADSVMGRFTISRDNSKNTLSLKMNSLRTEDTAVYYCAKVDEDDYGYFSIVPGDLKKYYFKYWGQGVQVTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG
T3_NB_G05 heavy chain I 235 Homo Sapiens , Mus Musculus EVHLVESGGGLATPGGSLRLSCAASGFTFSNYWMNWVRQTPGKGLEWIASINSAGGARDYADSVMGRFTISRDNSKNTLSLKMNSLRTEDTAVYYCAKVDEDDYGYFSIVPGDLKKYYFKYWGQGVQVTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG
T3_NB_G05 heavy chain J 235 Homo Sapiens , Mus Musculus EVHLVESGGGLATPGGSLRLSCAASGFTFSNYWMNWVRQTPGKGLEWIASINSAGGARDYADSVMGRFTISRDNSKNTLSLKMNSLRTEDTAVYYCAKVDEDDYGYFSIVPGDLKKYYFKYWGQGVQVTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG
T3_NB_G05 light chain L 214 Homo Sapiens , Mus Musculus DIQMTQSPSSLSASVGDRVTITCQASQGISSWLAWYQQKPGKAPKSLIYKASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYDSAPFSFGQGTEVEIKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
T3_NB_G05 light chain M 214 Homo Sapiens , Mus Musculus DIQMTQSPSSLSASVGDRVTITCQASQGISSWLAWYQQKPGKAPKSLIYKASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYDSAPFSFGQGTEVEIKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
T3_NB_G05 light chain N 214 Homo Sapiens , Mus Musculus DIQMTQSPSSLSASVGDRVTITCQASQGISSWLAWYQQKPGKAPKSLIYKASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYDSAPFSFGQGTEVEIKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
HIV Env gp120 B 503 Homo Sapiens , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREELKNCSFNMTTELRDKRQKVYSLFYRLDIVPINESQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVE
HIV Env gp120 D 503 Homo Sapiens , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREELKNCSFNMTTELRDKRQKVYSLFYRLDIVPINESQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVE
HIV Env gp120 F 503 Homo Sapiens , Mus Musculus MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCTNVTSVNTTGDREELKNCSFNMTTELRDKRQKVYSLFYRLDIVPINESQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVE
HIV Env gp41 ectodomain C 153 Homo Sapiens , Mus Musculus AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD
HIV Env gp41 ectodomain E 153 Homo Sapiens , Mus Musculus AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD
HIV Env gp41 ectodomain G 153 Homo Sapiens , Mus Musculus AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-15
Deposition Author(s): Kwong, P.D. , Roark, R.S. , Shapiro, L.S.