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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9OCB

Sf11 capsid icosahedral reconstruction

PDB DOI: 10.2210/pdb9ocb/pdb

Classification: VIRUS
Organism(s): Shigella Phage Sf11 Smd-2017

Deposited: 2025-04-24
Deposition Author(s): Parent, K.N. , Subramanian, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Literature

Sf11 capsid icosahedral reconstruction

Parent, K.N. , Subramanian, S.

Primary Citation of Related Structures: 9OCB


Proteins
Molecule Chains Sequence Length Organism Sequence
Major capsid protein gp39 A 356 Shigella Phage Sf11 Smd-2017 MEKIIFTKDLVANSAVVADQWNHLKIDRKVFVNAENALAKKYALNATALVTKDYWRDVDNVTTRVFRNEAGQDMMADLMGIAANINIGKTVAISRIASDAGKVVRTLSGQEPEDLDKTRYDYTGDVIPIFKTGYSREWRELLGMQAEGFDPLLDDQANVTFNLRSDMAQYLLTGDQTLNVNGVYTGYGITNHPNTIQVNLNASGGLNIDLQTATPDEIVTFFNQDFQAILDAQNVFEQVTLWVSPAVRRSFMRPYSNAAGFKGGTVEQYITQFGNGRIGKIGTNFLLTGNHFVGYVRNDMYIRPRVAQPVSTYAAARANPHDNFNFLVWSAMGLQIRKDFTGKSKVFNGYGTQTPQ
Major capsid protein gp39 B 356 Shigella Phage Sf11 Smd-2017 MEKIIFTKDLVANSAVVADQWNHLKIDRKVFVNAENALAKKYALNATALVTKDYWRDVDNVTTRVFRNEAGQDMMADLMGIAANINIGKTVAISRIASDAGKVVRTLSGQEPEDLDKTRYDYTGDVIPIFKTGYSREWRELLGMQAEGFDPLLDDQANVTFNLRSDMAQYLLTGDQTLNVNGVYTGYGITNHPNTIQVNLNASGGLNIDLQTATPDEIVTFFNQDFQAILDAQNVFEQVTLWVSPAVRRSFMRPYSNAAGFKGGTVEQYITQFGNGRIGKIGTNFLLTGNHFVGYVRNDMYIRPRVAQPVSTYAAARANPHDNFNFLVWSAMGLQIRKDFTGKSKVFNGYGTQTPQ
Major capsid protein gp39 C 356 Shigella Phage Sf11 Smd-2017 MEKIIFTKDLVANSAVVADQWNHLKIDRKVFVNAENALAKKYALNATALVTKDYWRDVDNVTTRVFRNEAGQDMMADLMGIAANINIGKTVAISRIASDAGKVVRTLSGQEPEDLDKTRYDYTGDVIPIFKTGYSREWRELLGMQAEGFDPLLDDQANVTFNLRSDMAQYLLTGDQTLNVNGVYTGYGITNHPNTIQVNLNASGGLNIDLQTATPDEIVTFFNQDFQAILDAQNVFEQVTLWVSPAVRRSFMRPYSNAAGFKGGTVEQYITQFGNGRIGKIGTNFLLTGNHFVGYVRNDMYIRPRVAQPVSTYAAARANPHDNFNFLVWSAMGLQIRKDFTGKSKVFNGYGTQTPQ
Major capsid protein gp39 D 356 Shigella Phage Sf11 Smd-2017 MEKIIFTKDLVANSAVVADQWNHLKIDRKVFVNAENALAKKYALNATALVTKDYWRDVDNVTTRVFRNEAGQDMMADLMGIAANINIGKTVAISRIASDAGKVVRTLSGQEPEDLDKTRYDYTGDVIPIFKTGYSREWRELLGMQAEGFDPLLDDQANVTFNLRSDMAQYLLTGDQTLNVNGVYTGYGITNHPNTIQVNLNASGGLNIDLQTATPDEIVTFFNQDFQAILDAQNVFEQVTLWVSPAVRRSFMRPYSNAAGFKGGTVEQYITQFGNGRIGKIGTNFLLTGNHFVGYVRNDMYIRPRVAQPVSTYAAARANPHDNFNFLVWSAMGLQIRKDFTGKSKVFNGYGTQTPQ
Major capsid protein gp39 E 356 Shigella Phage Sf11 Smd-2017 MEKIIFTKDLVANSAVVADQWNHLKIDRKVFVNAENALAKKYALNATALVTKDYWRDVDNVTTRVFRNEAGQDMMADLMGIAANINIGKTVAISRIASDAGKVVRTLSGQEPEDLDKTRYDYTGDVIPIFKTGYSREWRELLGMQAEGFDPLLDDQANVTFNLRSDMAQYLLTGDQTLNVNGVYTGYGITNHPNTIQVNLNASGGLNIDLQTATPDEIVTFFNQDFQAILDAQNVFEQVTLWVSPAVRRSFMRPYSNAAGFKGGTVEQYITQFGNGRIGKIGTNFLLTGNHFVGYVRNDMYIRPRVAQPVSTYAAARANPHDNFNFLVWSAMGLQIRKDFTGKSKVFNGYGTQTPQ
Major capsid protein gp39 F 356 Shigella Phage Sf11 Smd-2017 MEKIIFTKDLVANSAVVADQWNHLKIDRKVFVNAENALAKKYALNATALVTKDYWRDVDNVTTRVFRNEAGQDMMADLMGIAANINIGKTVAISRIASDAGKVVRTLSGQEPEDLDKTRYDYTGDVIPIFKTGYSREWRELLGMQAEGFDPLLDDQANVTFNLRSDMAQYLLTGDQTLNVNGVYTGYGITNHPNTIQVNLNASGGLNIDLQTATPDEIVTFFNQDFQAILDAQNVFEQVTLWVSPAVRRSFMRPYSNAAGFKGGTVEQYITQFGNGRIGKIGTNFLLTGNHFVGYVRNDMYIRPRVAQPVSTYAAARANPHDNFNFLVWSAMGLQIRKDFTGKSKVFNGYGTQTPQ
Major capsid protein gp39 G 356 Shigella Phage Sf11 Smd-2017 MEKIIFTKDLVANSAVVADQWNHLKIDRKVFVNAENALAKKYALNATALVTKDYWRDVDNVTTRVFRNEAGQDMMADLMGIAANINIGKTVAISRIASDAGKVVRTLSGQEPEDLDKTRYDYTGDVIPIFKTGYSREWRELLGMQAEGFDPLLDDQANVTFNLRSDMAQYLLTGDQTLNVNGVYTGYGITNHPNTIQVNLNASGGLNIDLQTATPDEIVTFFNQDFQAILDAQNVFEQVTLWVSPAVRRSFMRPYSNAAGFKGGTVEQYITQFGNGRIGKIGTNFLLTGNHFVGYVRNDMYIRPRVAQPVSTYAAARANPHDNFNFLVWSAMGLQIRKDFTGKSKVFNGYGTQTPQ
Putative capsid decoration protein gp40 H 155 Shigella Phage Sf11 Smd-2017 MATIRYGTIIGGPARKNDPQIREGIMNAALQPGALVTFNDDDKIIAHATAGGQGFPYVLQHNYLGGGDVSEAVPANATGMAVQCEFGVTYHALVAQSSVLKKGTPLASNGAGALKVAGDGDNILFYSYETYTVASDGAELVAVRRAGNASMPAGA
Putative capsid decoration protein gp40 I 155 Shigella Phage Sf11 Smd-2017 MATIRYGTIIGGPARKNDPQIREGIMNAALQPGALVTFNDDDKIIAHATAGGQGFPYVLQHNYLGGGDVSEAVPANATGMAVQCEFGVTYHALVAQSSVLKKGTPLASNGAGALKVAGDGDNILFYSYETYTVASDGAELVAVRRAGNASMPAGA
Putative capsid decoration protein gp40 J 155 Shigella Phage Sf11 Smd-2017 MATIRYGTIIGGPARKNDPQIREGIMNAALQPGALVTFNDDDKIIAHATAGGQGFPYVLQHNYLGGGDVSEAVPANATGMAVQCEFGVTYHALVAQSSVLKKGTPLASNGAGALKVAGDGDNILFYSYETYTVASDGAELVAVRRAGNASMPAGA
Putative capsid decoration protein gp40 K 155 Shigella Phage Sf11 Smd-2017 MATIRYGTIIGGPARKNDPQIREGIMNAALQPGALVTFNDDDKIIAHATAGGQGFPYVLQHNYLGGGDVSEAVPANATGMAVQCEFGVTYHALVAQSSVLKKGTPLASNGAGALKVAGDGDNILFYSYETYTVASDGAELVAVRRAGNASMPAGA
Putative capsid decoration protein gp40 L 155 Shigella Phage Sf11 Smd-2017 MATIRYGTIIGGPARKNDPQIREGIMNAALQPGALVTFNDDDKIIAHATAGGQGFPYVLQHNYLGGGDVSEAVPANATGMAVQCEFGVTYHALVAQSSVLKKGTPLASNGAGALKVAGDGDNILFYSYETYTVASDGAELVAVRRAGNASMPAGA
Putative capsid decoration protein gp40 M 155 Shigella Phage Sf11 Smd-2017 MATIRYGTIIGGPARKNDPQIREGIMNAALQPGALVTFNDDDKIIAHATAGGQGFPYVLQHNYLGGGDVSEAVPANATGMAVQCEFGVTYHALVAQSSVLKKGTPLASNGAGALKVAGDGDNILFYSYETYTVASDGAELVAVRRAGNASMPAGA
Putative capsid decoration protein gp40 N 155 Shigella Phage Sf11 Smd-2017 MATIRYGTIIGGPARKNDPQIREGIMNAALQPGALVTFNDDDKIIAHATAGGQGFPYVLQHNYLGGGDVSEAVPANATGMAVQCEFGVTYHALVAQSSVLKKGTPLASNGAGALKVAGDGDNILFYSYETYTVASDGAELVAVRRAGNASMPAGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-04-24
Deposition Author(s): Parent, K.N. , Subramanian, S.