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FASTA Sequence PDB Format mmCIF Format
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9O17

Cryo-em structure of methanosarcina acetivorans 70s ribosome

PDB DOI: 10.2210/pdb9o17/pdb

Classification: RIBOSOME
Organism(s): Methanosarcina Acetivorans

Deposited: 2025-04-03
Deposition Author(s): Armache, J.-P. , Bevilacqua, P.C. , Ferry, J.G. , Fordjour, G.N.R. , Ghosh, A. , Murakami, K.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.92 Å

9o17
Literature

Cryo-em structure of methanosarcina acetivorans 70s ribosome

Armache, J.-P. , Bevilacqua, P.C. , Ferry, J.G. , Fordjour, G.N.R. , Ghosh, A. , Murakami, K.S.

Primary Citation of Related Structures: 9O17


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S rRNA aa 1478 NA AUUCUGGUUGAUCCUGCCAGAGGUUACUGCUAUCGGUGUUCGCCUAAGCCAUGCGAGUCAUAUGUUCUUUGUGAACAUGGCGUACUGCUCAGUAACACGUGGAUAACCUGCCCUUGGGUCCGGCAUAACCCCGGGAAACUGGGGAUAAUACCGGAUAACGCACAUAUGCUGGAAUGCUUUCUGCGUAAAACGGAUUCGUCUGCCCAAGGAUGGGUCUGCGGCCUAUCAGGUAGUAGUGGGUGUAACGUACCUACUAGCCGACAACGGGUACGGGUUGUGAGAGCAAGAGCCCGGAGAUGGAUUCUGAGACAUGAAUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAAACUUUACAAUGCGGGAAACCGUGAUAAGGGGACACCGAGUGCCAGCAUCAUAUGCUGGCUGUCCGGAUGUGUAAAAUACAUCUGUUAGCAAGGGCCGGGCAAGACCGGUGCCAGCCGCCGCGGUAACACCGGCGGCCCGAGUGGUGAUCGUGAUUAUUGGGUCUAAAGGGUCCGUAGCCGGUUUGGUCAGUCCUCCGGGAAAUCUGACAGCUCAACUGUUAGGCUUUCGGGGGAUACUGCCAGACUUGGAACCGGGAGAGGUAAGAGGUACUACAGGGGUAGGAGUGAAAUCUUGUAAUCCCUGUGGGACCACCUGUGGCGAAGGCGUCUUACCAGAACGGGUUCGACGGUGAGGGACGAAAGCUGGGGGCACGAACCGGAUUAGAUACCCGGGUAGUCCCAGCCGUAAACGAUGCUCGCUAGGUGUCAGGCAUGGCGCGACCGUGUCUGGUGCCGCAGGGAAGCCGUGAAGCGAGCCACCUGGGAAGUACGGCCGCAAGGCUGAAACUUAAAGGAAUUGGCGGGGGAGCACAACAACGGGUGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACAACUCACCGGGGACGACAGCAAUAUGUAGGCCAGGCCGAAGACCUUGCCUGAAUCGCUGAGAGGAGGUGCAUGGCCGUCGCCAGUUCGUACUGUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCGUGCCCACUGUUACCAGCAUGUCCUCCGGGACGAUGGGUACUCUGUGGGGACCGCCGGUGUUAAAUCGGAGGAAGGUGCGGGCCACGGUAGGUCAGUAUGCCCCGAAUUUCCCGGGCUACACGCGGGCUACAAUGAAUGGGACAAUGGGUCCCUCCCCUGAAAAGGGCUGGUAAUCUCACAAACCCAUCCGUAGUUCGGAUCGAGGGCUGUAACUCGCCCUCGUGAAGCUGGAAUCCGUAGUAAUCGCGUUUCAAUAUAGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGUCAAACCACCCGAGUGAGGUAUGGGUGAGGGCACGGACUUCGUGCCGUGUUCGAACCUGAAUUUUGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGGAUCACCUCCU

Proteins
Molecule Chains Sequence Length Organism Sequence
Small ribosomal subunit protein eS8 AK 125 Methanosarcina Acetivorans MRWQGSSRRKATGGKVITARGKRKFEMGRESAETRISEIKRKKVPTMGGNRKVRLLQSNVANVTNPKDGKTVTAPIETVIDNTANKHYVRRNILTKGSVIRTSMGTARVTSRPGQDGVVNAVLIE
Small ribosomal subunit protein uS9 AL 134 Methanosarcina Acetivorans MVKVVNSSGKHKTATARATVMKGTGKVRINKIPLELYTPELAMMKISEPLLIAGNDVVSGLDINVDVRGGGIIGQANAVRTAVARGIVEWTNDTAIRDNFAAYDRNLLVSDSRQKESKNFGGPGARAKYQKSYR
Small ribosomal subunit protein uS11 AN 126 Methanosarcina Acetivorans MADMKWAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLKDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGTRPKGGRRV
Small ribosomal subunit protein uS12 AO 142 Methanosarcina Acetivorans MAKGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPRR
Small ribosomal subunit protein uS13 AP 182 Methanosarcina Acetivorans MRAAPEFSAYSLRVFDRGYRMLYALQWRKYMVEENNNEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDIVPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQRTKSTGRRGSTVGVSRKK
Small ribosomal subunit protein uS14 AR 50 Methanosarcina Acetivorans MTETIKKSGRGVNECKRCGRKQGLVRKYDIYLCRHCFREIAHEMGFEKYS
Small ribosomal subunit protein uS15 AQ 152 Methanosarcina Acetivorans MAKMHTKRKGKSSSTRPIRTDPPEWCKIGADEVTTIVLDLWKQGVSTAEIGMVLRDRYGVPDAKLITGKKVTTILKENNVAPNIPEDLTNLIVKALGLRKHLSVNKKDVHNKRSLNLTESKIRRLVKYYKQEKVLPRDWFYKPETAEMMITR
Small ribosomal subunit protein uS17A AS 109 Methanosarcina Acetivorans MARDIGLNIPAPSEECDDAYCPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIAECRPISKTKSYVVVKAEVPK
Small ribosomal subunit protein uS19 AU 136 Methanosarcina Acetivorans MAKKSSSRLPKRKGEYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKKIRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK
Small ribosomal subunit protein eS19 AV 149 Methanosarcina Acetivorans MTTVFDVPATEMIEKLAGILKEDDKIVPPEWAGNVKTGVHKELPPTNDDWWYIRCAAVLRKIYTDGPIGIERLRSVYGGKKDNGSKPFHKAKGSGSVARKTVQQLEAAGFLQKVKDGRTVSAKGRSMMDNAAHELKLELLEKIPELAKY
Small ribosomal subunit protein uS2 AB 247 Methanosarcina Acetivorans MEEIEQTGQEETGAQPMPEEDVVAEAKPALEKEAAVKTGSIPSESEDETASHKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYDPARILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNDTPFNYELTDFETPL
Small ribosomal subunit protein eS24 AW 101 Methanosarcina Acetivorans MDIKILKDKNNSLLNRRELDFVVKYEGSTPSRSDVRNKLAAMLNAPLELLIIQRIKTEYGMQESKGYAKVYADEARMKQVEQEYILKRNPAPGAEAEEEEA
Small ribosomal subunit protein eS27 AX 62 Methanosarcina Acetivorans MVDYTQRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTITTHILEVLE
Small ribosomal subunit protein eS28 AY 76 Methanosarcina Acetivorans MLIMAEESTIGGFAAEVIDVIGNTGMHGEASQIQCRVLEGRDKGRVITRNCVGPVRIGDILMLLETSREAKKLTTR
Small ribosomal subunit protein eS6 AH 136 Methanosarcina Acetivorans MANFKVVVSDPKEGRAYQIDIKDAEANALIGKAIGDVVDGAIFGLAGYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVGYVPKLPGQRRRKMMRGKEIAPDIIQVNAKIVEYGSKSIKALLGLETAEEAPAAE
Small ribosomal subunit protein uS10 AM 102 Methanosarcina Acetivorans MQKARIRLSGISPKDLDGVCNQVKSIAERTGVNISGPVPLPTKKLVVPTRKSPSGDGTATWDHWEMRVHKRLIDIAADERALRQLMRIQVPKDINIEIVLEG
Small ribosomal subunit protein eS17 AT 64 Methanosarcina Acetivorans MGNIRETNIKRTAFSLLENYGDVFTKDFETNKALVTKYTTIESKIIRNRVAGYVTRKVARMKVY
Large ribosomal subunit protein eL32 BA 161 Methanosarcina Acetivorans MIMMAEEFNEVEGTNEVEDINEVEGTSVSTLDMDPESRRLFNVRKVQKGKKPQFKRTCSHKFKRLDDNWRRPRGSQGKQRRKYVSKGALVQVGYGSPAAVKGLHPSGYSDVLISSIAELELVDPSYEAIRIAGTIGAQKKALILAKAEEAGIKVLNSGRSE
Large ribosomal subunit protein eL43 BB 94 Methanosarcina Acetivorans MAKKFTKKGRISRSAGRFGPRYGRKDRKLVADLEERMRAPHVCTKCARPTVERIGTGIWKCSKCGHTFAGGTYIPYTSVGQTLLRTMKNIAEAK
Large ribosomal subunit protein eL37 BC 56 Methanosarcina Acetivorans MSKGTSSMGKRQKRTHAKCRRCGSVSFNVHTKQCTSCGFGKTSRMRTYKWQAKCKY
Large ribosomal subunit protein eL39 BD 51 Methanosarcina Acetivorans MSHNMKGQKKRLAKAHKQNTRVPVWVIVKTNRKVVSHPRRRHWRRRSLDVK
Small ribosomal subunit protein uS3 AC 318 Methanosarcina Acetivorans MAIEKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQIDAQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRIIQPGVVLPDSYKVRESVEVEEPAEKPAEKPAEKPAEKAAAPKKEAAKARAPAPAPEAPAPAPEAPAPAPVEEAEVAEPEEAEEVQAETSEEIEGAELVYVEGSDEVRRQVNGVWQHKHGSYDYWHPMARVHKEAKE
Large ribosomal subunit protein eL40 BE 52 Methanosarcina Acetivorans MTKMARFPEAEERLLNKKICMKCNARNAIRATRCRKCGYGTLRVKSKESKGA
Large ribosomal subunit protein eL42 BF 92 Methanosarcina Acetivorans MKIPKRFRTYCPFCKTHNEVVVERVKKGQASSMTHIARQKKRQEGIGNSGKFSKVPGGDKPTKRIWLRYRCTVCKKAHQRPCFRAKKFEFKE
Large ribosomal subunit protein uL6 BG 176 Methanosarcina Acetivorans MVKEIARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGIMIDVKDGEVVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKVDGKTLIIGNFLGEKKPRFAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA
Large ribosomal subunit protein eL8 BH 120 Methanosarcina Acetivorans MAQLAKFDVPEELTNKALEALELARDTGKIKKGTNEATKAIERGNAKLVLIAEDIEPAEIVAHIGPLSEEKKAPYIFIKNQKELGAASGLGVSCATVAIVDAGKAAEMVQDIAQKLEALK
Large ribosomal subunit protein uL16 BI 173 Methanosarcina Acetivorans MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVVDEGAELVQ
Large ribosomal subunit protein uL13 BJ 143 Methanosarcina Acetivorans MLKMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREYRETRERGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDADMRLLSSSRYVELGEVSQKMGSKF
Large ribosomal subunit protein uL14 BK 132 Methanosarcina Acetivorans MKGMRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPVAREVAERFPKIGTTASIIV
Large ribosomal subunit protein uL15 BL 140 Methanosarcina Acetivorans MDTKKFRGSRTCGGGTHKNRRGAGNRGGRGKAGGCKHHFVRAMMRGYSYGKHGFKRPDEVSRDVSIVNVGELDELASYLVEEGLAEVKDGAYHINLENLGIEKVLGSGRVTKNLVVTSEEFSASAREKIENAGGSCIDAE
Large ribosomal subunit protein eL15 BM 196 Methanosarcina Acetivorans MVKSFYGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNRGRRTQKMGKNKVSGGMSIQRIAEVRADRRYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWVCDPSSRGRATRGKTSAGRKGRGMATRGKGTEKTRPSIRAYKSRGK
Large ribosomal subunit protein uL18 BN 174 Methanosarcina Acetivorans MATGPRYKVPFRRRREGRTNYHLRLKLLLSRQDRVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFGLKSLQKGYEGGILDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVFPPDERIRGEHIAGYREESSDLPEQFEATKEKIFAEFS
Small ribosomal subunit protein eS1 AD 203 Methanosarcina Acetivorans MARKKVQRKLDGWKSKEWYNIEAPVYLNRAIVGNTMAGDPSLLVGRNVETTVGELTNDMTKNNTKVILRINNVVGDIATTDLMGHELTTDYIRSIVKRQTSRIDANVDVKTKDGYVIRVKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTEVETIPAAAPAPAAA
Large ribosomal subunit protein eL18 BO 126 Methanosarcina Acetivorans MGKKSLVKLTRKTNPRIVSLILTLKERANGDSAPIWKDIAKRLEAPSRNYAAVNISKINRHTAEDDVLLIPGKVLGAGLLDHPVTIAALTFSDSAFEKITEAGGKCLSLEEIMEANPKGSGIRIFR
Large ribosomal subunit protein eL19 BP 151 Methanosarcina Acetivorans MSDLSNQRKLASKVLGCGLDRVWLNPEASEEIASAITREDIRGLIEEGTIKAKPVKGVSRGRARALAAKRKYGHCKGHGSRKGKKGARTPKKEQWIKKIRALRRRLKELRADGALDKSVYCRLYRKAKGGEYRSVSHLNSHLESEKLLKKE
Large ribosomal subunit protein eL20 BQ 61 Methanosarcina Acetivorans MVMMKSFIVKGKFKAGSTWEKFTKKIESQNEKNATDKTYSIFGSKHGVKRSQVQIESVAEE
Large ribosomal subunit protein eL21 BR 97 Methanosarcina Acetivorans MTNSHGEKRCTRYKLQKTVRERGISPVSRAIQEFEEGQMVHIDIDPSVQKGMPNPKFQGSTGKVIGQRGRSYVLEVRSGNAMKEVFSLPQHLKPQKY
Large ribosomal subunit protein uL22 BS 151 Methanosarcina Acetivorans MARINYSINGDPETTSKAMGSELHISPKKSREVCCKIKGMKASEARKFLEDVIAMKQAVPFKKHHDGSGHRKGPMAAGKYPISASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRATPKDTETVNIEMILSEVR
Large ribosomal subunit protein uL23 BT 82 Methanosarcina Acetivorans MSSINYPFVTEKAMMLLDENKLQFIVDTRSNKKQILEDVEKMYGFKVKSVRTMTTMKGMKKAVLAFEEPEAAHEIATRIGLM
Large ribosomal subunit protein uL24 BU 119 Methanosarcina Acetivorans MIAMVSKQPRKQRKARYAAPLHIRQKFMGARLSEALTKEYGTRSAAVITGDTVKVMRGDFKGTEGKVQSVSLMDGTITVDGVISTKVDGTEVPRPLNPSNVMITKLEMKDGRRASSIKK
Large ribosomal subunit protein eL24 BV 62 Methanosarcina Acetivorans MEQRKCYFCGKMLEPGTGKLYVKKDGSTYFMCSSKCMSNFALGRLPRRTEWTEKGKIQLKKA
Large ribosomal subunit protein uL29 BW 67 Methanosarcina Acetivorans MAILRTSEIRTMTIEERADELENLNNELVRERALTSAGGAPENPGRIGEIRRTIARIKTIQHELNEI
Large ribosomal subunit protein uL30 BX 153 Methanosarcina Acetivorans MYAVVRLRGQVNVRYTIEDTMKMLRLHKVNHCVFVPENPHYKGMVQKVKDYVAYGKIDAKTLAEVLENRGRLEGDTRLTEEYIRENTDYDSIQAFAEAVIEGKSSLKDIPKLKPVFRLHPPRKGHAGIKRTVQQGGVLGNHDENINVLLHKMR
Small ribosomal subunit protein uS4 AE 218 Methanosarcina Acetivorans MAYPGKKSKSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDANIDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSPLKNESHPERPVQVASFLADSGTTLKAAAEAKQAREKPPERGGGRRKRGGRR
Large ribosomal subunit protein eL30 BY 99 Methanosarcina Acetivorans MMKMKINVDKSLIKAVKTGKVIVGANRTIDAAANGSAKMVVLASNCPEDIKKKIQATDIPVLEYEGTSVELGPVCGKPFTIAAMAILDVGESDILAATA
Large ribosomal subunit protein eL31 BZ 89 Methanosarcina Acetivorans MADDMVKEQIYTIPLREVRKVPAWKRANRAVIEVRGFLVRHMKTESVQVKLDKSINEHLWEKGCEKPPLSIRVRAVKFADGEVQAELAQ
Putative zinc finger domain-containing protein AZ 56 Methanosarcina Acetivorans MSSQKVEYCTSCGIRLVEKGYVKFPCPQCGAEIGRCISCRQQGNVYTCPKCGFKAP
Small ribosomal subunit protein eS4 AF 235 Methanosarcina Acetivorans MTHQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVNKLCRINNKTTVKGGKFQLNLNDGTNIIGSNEYGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGETDFETIEDYVIVIGEDKPEIRLGGEISE
Small ribosomal subunit protein uS5 AG 209 Methanosarcina Acetivorans MAFDQDWVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPDLEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDALNQVNVVRLPVYYGKEEV
Small ribosomal subunit protein uS7 AI 189 Methanosarcina Acetivorans MIFLYKIFGKWDPTEVEVKDLGIKRYVSLTPVIVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAKAAR
Small ribosomal subunit protein uS8 AJ 130 Methanosarcina Acetivorans MVLLDPLANALSTIKNAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQLLAYVY
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-04-03
Deposition Author(s): Armache, J.-P. , Bevilacqua, P.C. , Ferry, J.G. , Fordjour, G.N.R. , Ghosh, A. , Murakami, K.S.