9NVW
Cryo-em structure of rhesus antibody ch35-apex1.08 in complex with hiv env trimer q23-apex-gt2
PDB DOI: 10.2210/pdb9nvw/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Human Immunodeficiency Virus 1 , Macaca Mulatta
Deposited: 2025-03-21 Deposition Author(s): Kwong, P.D. , Roark, R.S. , Shapiro, L.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Cryo-em structure of rhesus antibody ch35-apex1.08 in complex with hiv env trimer q23-apex-gt2
Kwong, P.D. , Roark, R.S. , Shapiro, L.S.
Primary Citation of Related Structures: 9NVW
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CH35-Apex1.08 heavy chain | H | 246 | Human Immunodeficiency Virus 1 , Macaca Mulatta | QVQLQESGPGLLKPSETLSLTCAVSGGSISSGYYDWSWIRQPPGKGLEWIGHIAKSGTTNYNPTLKSRVTISRDTSKNQFSLRLNSVTAADTAVYYCARETFIYEDDSGDYYTEVDGYNRFDVWGAGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGGLEVLFQ |
| CH35-Apex1.08 kappa chain | L | 214 | Human Immunodeficiency Virus 1 , Macaca Mulatta | DIVMTQSPSSLSASVGDRVTFTCRASENINNYLHWYQQKPGKAPNLLIYAAYTLQSGVPSRFSGSGSGTDFTLIISSLQPEDVATYYCQHSDGVPWTFGQGTKVEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| HIV envelope gp120 | B | 478 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCRNVTSVNTTGDREELKNCTFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVEGGGGSGGGGS |
| HIV envelope gp120 | D | 478 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCRNVTSVNTTGDREELKNCTFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVEGGGGSGGGGS |
| HIV envelope gp120 | F | 478 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AENLWVTVYYGVPVWRDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLHCRNVTSVNTTGDREELKNCTFNMTTELRDKRQKVYSLFYRLDIVPINENQGSEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRPNNYTRKSIRIGPGQAFYAMGDIIGDIRQAHCNVSRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTDSTQESNDTITLPCRIKQIINMWQRAGQCMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEPLGVAPTRCKRRVVEGGGGSGGGGS |
| HIV envelope gp41 ectodomain | C | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD |
| HIV envelope gp41 ectodomain | E | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD |
| HIV envelope gp41 ectodomain | G | 153 | Human Immunodeficiency Virus 1 , Macaca Mulatta | AVGIGAVRRGFLGAAGSTMGAASITLTVQARQLLSGIVQPQNNLLRAPEAQQHLLKLGVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEIGNYTQLIYRLIEESQNQQEKNEKELLALD |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-03-21 Deposition Author(s): Kwong, P.D. , Roark, R.S. , Shapiro, L.S.