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9NNF

Cryo-em structure of a de-novo designed binder ny1-b04 in complex with hla-a*02:01 and ny-eso-1-derived peptide sllmwitqc

PDB DOI: 10.2210/pdb9nnf/pdb

Classification: IMMUNE SYSTEM
Organism(s): Escherichia Coli , Homo Sapiens , Synthetic Construct

Deposited: 2025-03-05
Deposition Author(s): Fernandez-Quintero, M.L. , Gharpure, A. , Ward, A.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Literature

Cryo-em structure of a de-novo designed binder ny1-b04 in complex with hla-a*02:01 and ny-eso-1-derived peptide sllmwitqc

Fernandez-Quintero, M.L. , Gharpure, A. , Ward, A.B.

Primary Citation of Related Structures: 9NNF


Proteins
Molecule Chains Sequence Length Organism Sequence
De-novo designed binder NY1-B04 A 145 Escherichia Coli , Homo Sapiens , Synthetic Construct MKEELRAAAAELLAAAEALAEELRRLGLEEAAAHVLAAARHVAAALELIAATPASELNPELKREVAAHLREAAAHFEAAAEIVAAEDPLAGAMLREAALAARSMAAYVLHSSPEEALQQAAVFATGLAGAMLTMTGLVRERLAAR
HLA class I histocompatibility antigen, A alpha chain B 276 Escherichia Coli , Homo Sapiens , Synthetic Construct GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
Beta-2-microglobulin C 100 Escherichia Coli , Homo Sapiens , Synthetic Construct MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
NY-ESO-1-derived peptide SLLMWITQC D 9 Escherichia Coli , Homo Sapiens , Synthetic Construct SLLMWITQC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-05
Deposition Author(s): Fernandez-Quintero, M.L. , Gharpure, A. , Ward, A.B.