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FASTA Sequence PDB Format mmCIF Format
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9NHS

Cryo-em structure of siwi-pirna-target(39-nt)-gtsf1-maelstrom-spindle-e complex

PDB DOI: 10.2210/pdb9nhs/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Bombyx Mori , Synthetic Construct

Deposited: 2025-02-25
Deposition Author(s): Gebert, L.F.R. , Macrae, I.J. , Sarkar, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

Literature

Cryo-em structure of siwi-pirna-target(39-nt)-gtsf1-maelstrom-spindle-e complex

Gebert, L.F.R. , Macrae, I.J. , Sarkar, S.

Primary Citation of Related Structures: 9NHS


Proteins
Molecule Chains Sequence Length Organism Sequence
Piwi-like protein Siwi A 899 Bombyx Mori , Synthetic Construct MSEPRGRGRARGRAGRGGDGGGPAPRRPGEQAGPSQQSMPPGPRPQPPSGWGPQSSVPPVRAGVPTPTAQAGRASHRVTPTTHEHPGDIDVQQRMQKLELGPHSSGGGDASSVVGRGSRRGGGRVLPETISILRTRPEAVTSKKGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEEDSTGVRKALMRVHSKTLGGYLFDGTVLYTVNRLHPDPMELYSDRKTDNERMRILIKLTCEVSPGDYHYIQIFNIIIRKCFNLLKLQLMGRDYFDPEAKIDIPEFKLQIWPGYKTTINQYEDRLLLVTEIAHKVLRMDTVLQMLSEYAATKGNNYKKIFLEDVVGKIVMTDYNKRTYRVDDVAWNVSPKSTFKMRDENITYIEYYYKKYNLRIQDPGQPLLISRSKPREIRAGLPELIYLVPELCRQTGLSDEMRANFKLMRSLDVHTKIGPDKRIEKLNNFNRRFTSTPEVVEELATWSLKLSKELVKIKGRQLPPENIIQANNVKYPAGDTTEGWTRDMRSKHLLAIAQLNSWVVITPERQRRDTESFIDLIIKTGGGVGFRMRSPDLVVIRHDGPIEYANMCEEVIARKNPALILCVLARNYADRYEAIKKKCTVDRAVPTQVVCARNMSSKSAMSIATKVAIQINCKLGGSPWTVDIPLPSLMVVGYDVCHDTRSKEKSFGAFVATLDKQMTQYYSIVNAHTSGEELSSHMGFNIASAVKKFREKNGTYPARIFIYRDGVGDGQIPYVHSHEVAEIKKKLAEIYAGVEIKLAFIIVSKRINTRIFVQRGRSGENPRPGTVIDDVVTLPERYDFYLVSQNVREGTIAPTSYNVIEDTTGLNPDRIQRLTYKLTHLYFNCSSQVRVPSVCQYAHKLAFLAANSLHNQPHYSLNETLYFL
GTSF1 E 149 Bombyx Mori , Synthetic Construct MEVTIANPKPNQMITCPYEKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATPVLPSDENWDDETSTSYIPDPSKKGAHIITKAKGLTRSERQSLRKELIKTYRPLE
Maelstrom F 440 Bombyx Mori , Synthetic Construct MPKKKTPQNPFFFFMMDYRKEQAEIGIKYANTKELAEAAGPVWQNLRPTLKAKYEEKAKNEKEKNKQTGTKFTSTGIPIKVIEQQQREMKNAEDNEKKDIQNIVKLKVFDQSIKTEDFYVIDVNSYCKANGDYLIGEFTVTQFSLQDGVKNSYHETIIPSCVPVGYMFDVKLGAEEFGLEMPGTDDAGPNYIQILANIIDYLKQKDRTVQVLPPMFTLPEKVDAVQNFISQMCNCATEDDSLFRIYKLDTFFFTLINAISSHHDEGFPKESLALTQLTKDLFDYTPGIACERHESLDRSNVCTTSRVKRWVFTILDRCCPLLGIPLQPGKHLPFDYDINGILIFKEERKTRAAPSVPRTATASSNSSFINDSLNESFQSLNVTGETAASGSAPGRRVHKPLRMPRTDYSQRIQQAPELTEANFPTLTGHGRGRGLTRSNN
Spindle-E G 1443 Bombyx Mori , Synthetic Construct MDELKAFFNSPCPSSNQVTKLRGPLTGGFRIPKEDTMNDMNRKEAHRHMVVPSGTDYAREVKDRETELYLKNEIERKQYESMSAGLESLEQLSLIGASVQNIGELNDEAMTEVYSKYSFQKKEDANNLAINSYKQQILDRIRGFPVVIIEGPTGCGKTTQVPQWLLDDCYHNRRPCKIIVTQPRRIAAISITRRVAQERGWDVGGLVGYQVGLDNRTSTDTRIHYVTTGVLLQKLVSAKTMNEYTHVILDEVHERGQEMDFLLLVVKKLLYTMSPAVKVVLMSATFNSKAFADYFMIPTPRGLQMSTCIKVEKREHMFTVKTFYLNHLNKFGSVLQNSMPKNGEPGINPEMHHLVIKLLNAFEQIDKQEDNYMDRSEADLPSVLIFLPGINEIEDLYSSLTDHDLRTKVADLECANYKWWVLPLHSTITADEQVRVFQRAPLGHRKIILSTNIAESSITVPDIKYVVDFCLMKVLEADAITNFTSLKLCWASKTNCEQRAGRAGRVRDGRVYRLVTDKFYDSLRDECPPEIVRCPLERLALLAKMLDMGPPSDILALAMDPPDMSNIHRTVLVLKEIGALKKTLDNEWSSSDGDLTYMGRIMAKLPIDVRASKLIVLGYVYGCLDECVIMAAAMSVKNVFNSPFRERLNAYNSKLTWADGSTSDCIALLNVYKVWNHLRQQQQFKQQGSEVQWSRRFFVQVRALRELDDMVRELRLRLSREGLESEGNASPWARNELPLALKVIMAGAFYPQYFIQVSQDEEREREALRTLSGFDPRNTVYLRNFPDHQPGEVYASLIKKVVKQQIGDEPCVSFDKNGRKVFLTFNDGSYLSRSEKENSGDPTIPGQVALPVYKCIKARQLRLDIRIPLLPLEKANALASAMQINNKDISMERTVPRLPEIDDTHFPLKITHEVNVGKFWVQYDDESTAAELRLIQYALNHGPLLTHTGDVSADEIYAAPYADASGTVMCRVRVLKLLPMDMVEVAYMDYGGTGRVSTCNLHALPAGASRTCPPLGVPCALAGVAPARRLHDRPAWSPQAYSCFRELISRPRLIAKVYSVVHGVVAIELLTDGGHVSVNEILIKKGFAVPCEESYESKLNHDLRQTANELNLAQKRAYNKEQTEAAFYQLGDAAPPNYRECVADVCLKGPYSPLESSLHNLMYSSRDKPVQIDSSSVNSVLLDTEPQITYERLLVAAEVGQNESFSKLTLRLSTLMPNIPALPAIIALLFCPTAELRRDSSATRYVSALCGLGAAPDAAPRFPEHDLLVNIDADLDVEDIGWINHNRYLTDYMLYCGEGQDMPTADDEFRPQIPGIIRKNLMQLIKKRRKLRPTEAVPTAWEWKSVPEDELMEITVPDMVERAVLYELHVPLELHPVSRDHLLALKRDNDQLKLLVSRTPISSSAELSCKLCGTGPMPPHAMRLHLYSNIHKEKEEDFQMFQT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
piRNA b 25 NA UGGAGUGUGACAAUGGUGUUUGAUA
target RNA (39-nt) c 39 NA AAAAAAAUAUCAAACACCAUUGUCACACUCCAAAAAAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-02-25
Deposition Author(s): Gebert, L.F.R. , Macrae, I.J. , Sarkar, S.