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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9NDY

Composite baseplate asymmetric unit of johannrwettstein (bas63)

PDB DOI: 10.2210/pdb9ndy/pdb

Classification: VIRAL PROTEIN
Organism(s): Escherichia Phage Johannrwettstein

Deposited: 2025-02-18
Deposition Author(s): Hodgkinson-Bean, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.83 Å

Literature

Composite baseplate asymmetric unit of johannrwettstein (bas63)

Hodgkinson-Bean, J.

Primary Citation of Related Structures: 9NDY


Proteins
Molecule Chains Sequence Length Organism Sequence
Tube initiator protein (gp018) A 265 Escherichia Phage Johannrwettstein MLWDSNMQIKYSGKDGIYFHLRDNVDAFLTLSATENMEFDSPMQVTTQNMQSGQTVTDNVQRAPRTITISGVVVVGYEGSLLLTRQGQLVENFIDTLESWRDQKQIISVICKDGIKIDDSIITSFKASKDVGISNGLRVQLTFQEINFKAIVGQTDVSAATGKTATTNDGGATSKKNTGNTTTSLGNGKLNCQLLFDLDANGVRELTSAEDNALAKCSMSAKTRKGVTTFSDEAERNAGAALNSTAGNGKALQKHSVNPNKKGTY
Tube initiator protein (gp018) B 265 Escherichia Phage Johannrwettstein MLWDSNMQIKYSGKDGIYFHLRDNVDAFLTLSATENMEFDSPMQVTTQNMQSGQTVTDNVQRAPRTITISGVVVVGYEGSLLLTRQGQLVENFIDTLESWRDQKQIISVICKDGIKIDDSIITSFKASKDVGISNGLRVQLTFQEINFKAIVGQTDVSAATGKTATTNDGGATSKKNTGNTTTSLGNGKLNCQLLFDLDANGVRELTSAEDNALAKCSMSAKTRKGVTTFSDEAERNAGAALNSTAGNGKALQKHSVNPNKKGTY
Sheath initiator (gp022) C 139 Escherichia Phage Johannrwettstein MKTDFALNLGGDYVATLGSDSVYVAHGDLKITGNQIRIIPEDDKATQVAQRLHIRCLLRSGEVFFNTSAGFPYLQLAKFKQKTSIFDNYMKAYLVETRDVSNIYNYSSSMDNAQRKVTVNFDATTTTDILTDITQEVNI
Sheath initiator (gp022) D 139 Escherichia Phage Johannrwettstein MKTDFALNLGGDYVATLGSDSVYVAHGDLKITGNQIRIIPEDDKATQVAQRLHIRCLLRSGEVFFNTSAGFPYLQLAKFKQKTSIFDNYMKAYLVETRDVSNIYNYSSSMDNAQRKVTVNFDATTTTDILTDITQEVNI
Hub protein (gp020) E 325 Escherichia Phage Johannrwettstein MSVKDSTAGASFRCYQLAVGSETTAFNDKPTSHAKDSMQMDYFDNLQFTCNVSYTSQKNKVTSDDTTFEIYNLNKEMRAKFKTVGATVMLRAGYTTGFKRDANGDLIIEYDNLPLIYLGTIEYAYTYKRGVDMITKVICSNDKMERTTIKTSISYKAGTTRKNVIRDLVNRLGFSLIDEDLSSIDGYTYKNGFSVWGSVAEALTKVCEESSLRWYTFNKQIRVVPFNAKARQLSWEIYPYNVIDSLQGYYRRTRKVLKKENKTVIKVKTGVRCKIHLDGRIKMGDNVTIRESEDFEGQYRVKGLSHNLDFTGGAWTTELDLEKVE
Tape measure protein (gp017) F 742 Escherichia Phage Johannrwettstein MAQYTVDSFIVELGFSEKVVKGLQRVEKMSMQAAQRIERNINKAFDVKPNKSSQEALNRIVKNAQSASGRINKALNSSLNLDSQGVKSLKKLETQAKKTAKGINKSLRDAMKVDGKITIKTGRGRGGQSIPPVGGGAPRGPRVDVAQRQMERMFNNNFYSGLTRRLETIGGQGNQMAASFRGSLQGIYNKYKGTGKVGEYEMEVKKLIDVTKRWVIAENARLKSVKEAAWLQDRANSSLRQLVGGFVSAYALLELSQKTIEAGVKRQSAQLASTAIFGADTQQARMFAASFAHQIGQNYTDTMKQYSNFAAGAQPTLGFQGTQEFYKNAAMFARIRGATDEDLKGIMVAFQQMASKGKVQAEELRGQLGDRLAGAVQLFADAIGKTPQELDKMMQDGKLLAQDVLPKVSERMAELVKQAGGMNAVSKQTATSMGQAKAMWDNTLVALFNNSSEGISQLSNSVAMFLQGSLGSTQALGVVIGNLLKGASNLLDFVTDFMYRTSALYYYARAWYKDLDNSQQKLIKSAGEFLGTVVTIGGVVAVVSKAVKLLSGLVGGGIFGKILQRLGVSAAGTAAAGEAAAAAGGVTATRMALGTVGSALMLRGSTDPNAAKNYSEVTLPKPFENAVANITNPKRPMFFDENGQLQFAQYTQDVEGNRKLIDNGLSNWEIIMDKLSTSIDNFANKFNQTPMMMTPSGLPMQTKQTLNVTFNLDGKQIATKMVDITDKNQEDILLSSSYPEEE
Puncture apparatus (gp021) G 207 Escherichia Phage Johannrwettstein MKSPVTRMSGYVSECLDEFRKELYTGLPAIIQSFDSKTQTATVKPLYSINGLPMPEITGVPVQFPSGGGASLTFPVKTNDRCWLAFSMLPLDDFVVNDKNTQMETNMRRTHDISDCVAFVGICTRTQNFKPDPTAVRLHFGDSVLRVTDDGNFYFEGDVHISKNLYVKEEVHGSDFISDTTGVSFNEHTHHYYWTDPAGEADTTEAQ
Wedge protein 2 (gp023) H 489 Escherichia Phage Johannrwettstein MAGLTTTGLQTLRYQEIFDNIKSRLLRDISPNLDVSEDSQLGLFLASIARSLADTHEVLSEIYDGGTIDKAEGFNLDDITALNAVYRYVAQATRGQVEFTGTTGATIPSTTRLRSTAGNIFYPVSGITLTPSYCVEAVLEVNSLRTDANYVIIIDNVIFSYQPKSSDTITVLLTELADAINGGIVAKAEVINDGSALRVYKDEGDIIARTNPMVVTATTFLTFTKITTIHDVVAEEVGAIPALAGTLIEIETTVDGLDSVYNRYDLTTGRNEETDTELRQRYLESLAVTGVGTLDAIVAAVKRVQGVSDASGVENDTEETSSEGLPPKSFKIVVVGGQNDNVAQAIWDTKPAGIRAYGAIFGTAYDLGNLAHNVYFSRPTPKYAFVKVSYSLYDEESLTIPEEDIRDSIVQGINAYGRTLKVGNDVIPNRIYGYIYDVIKGVEINEIKVALSNNQSVPPSDGQYTTARITVDGDQYTVWESSQYTIAKE
Wedge protein 2 (gp023) I 489 Escherichia Phage Johannrwettstein MAGLTTTGLQTLRYQEIFDNIKSRLLRDISPNLDVSEDSQLGLFLASIARSLADTHEVLSEIYDGGTIDKAEGFNLDDITALNAVYRYVAQATRGQVEFTGTTGATIPSTTRLRSTAGNIFYPVSGITLTPSYCVEAVLEVNSLRTDANYVIIIDNVIFSYQPKSSDTITVLLTELADAINGGIVAKAEVINDGSALRVYKDEGDIIARTNPMVVTATTFLTFTKITTIHDVVAEEVGAIPALAGTLIEIETTVDGLDSVYNRYDLTTGRNEETDTELRQRYLESLAVTGVGTLDAIVAAVKRVQGVSDASGVENDTEETSSEGLPPKSFKIVVVGGQNDNVAQAIWDTKPAGIRAYGAIFGTAYDLGNLAHNVYFSRPTPKYAFVKVSYSLYDEESLTIPEEDIRDSIVQGINAYGRTLKVGNDVIPNRIYGYIYDVIKGVEINEIKVALSNNQSVPPSDGQYTTARITVDGDQYTVWESSQYTIAKE
Wedge protein 2 (gp023) K 489 Escherichia Phage Johannrwettstein MAGLTTTGLQTLRYQEIFDNIKSRLLRDISPNLDVSEDSQLGLFLASIARSLADTHEVLSEIYDGGTIDKAEGFNLDDITALNAVYRYVAQATRGQVEFTGTTGATIPSTTRLRSTAGNIFYPVSGITLTPSYCVEAVLEVNSLRTDANYVIIIDNVIFSYQPKSSDTITVLLTELADAINGGIVAKAEVINDGSALRVYKDEGDIIARTNPMVVTATTFLTFTKITTIHDVVAEEVGAIPALAGTLIEIETTVDGLDSVYNRYDLTTGRNEETDTELRQRYLESLAVTGVGTLDAIVAAVKRVQGVSDASGVENDTEETSSEGLPPKSFKIVVVGGQNDNVAQAIWDTKPAGIRAYGAIFGTAYDLGNLAHNVYFSRPTPKYAFVKVSYSLYDEESLTIPEEDIRDSIVQGINAYGRTLKVGNDVIPNRIYGYIYDVIKGVEINEIKVALSNNQSVPPSDGQYTTARITVDGDQYTVWESSQYTIAKE
Wedge protein 2 (gp023) L 489 Escherichia Phage Johannrwettstein MAGLTTTGLQTLRYQEIFDNIKSRLLRDISPNLDVSEDSQLGLFLASIARSLADTHEVLSEIYDGGTIDKAEGFNLDDITALNAVYRYVAQATRGQVEFTGTTGATIPSTTRLRSTAGNIFYPVSGITLTPSYCVEAVLEVNSLRTDANYVIIIDNVIFSYQPKSSDTITVLLTELADAINGGIVAKAEVINDGSALRVYKDEGDIIARTNPMVVTATTFLTFTKITTIHDVVAEEVGAIPALAGTLIEIETTVDGLDSVYNRYDLTTGRNEETDTELRQRYLESLAVTGVGTLDAIVAAVKRVQGVSDASGVENDTEETSSEGLPPKSFKIVVVGGQNDNVAQAIWDTKPAGIRAYGAIFGTAYDLGNLAHNVYFSRPTPKYAFVKVSYSLYDEESLTIPEEDIRDSIVQGINAYGRTLKVGNDVIPNRIYGYIYDVIKGVEINEIKVALSNNQSVPPSDGQYTTARITVDGDQYTVWESSQYTIAKE
Wedge protein 1 (gp024) J 285 Escherichia Phage Johannrwettstein MFQKIDNVYYKTLDERTVTQFKDKFIYTSLLKAVTDELQTLEDVSWQMHTERNIRKAVGQQLDNIGSLIKVPRPLGADDETYRAMLYIQIFLRRSDTTPTFLQNAIMTLYNATFSQIFEHITPMTAGIVVRVNTRNNVIDTAYTLAKIAATTIGSAVILRDVTLNGTAWTPVEVADSALAIVDDKDNWFVTDANKGLVTNNTGGSLEKNLLGSLADAGVRDAYFKVDRTANSGSVDYLKVNKNYNATDNYIVGKETVAGGDYGVMAEVAQIIKGRKDKSQQEGSS
Wedge protein 1 (gp024) M 285 Escherichia Phage Johannrwettstein MFQKIDNVYYKTLDERTVTQFKDKFIYTSLLKAVTDELQTLEDVSWQMHTERNIRKAVGQQLDNIGSLIKVPRPLGADDETYRAMLYIQIFLRRSDTTPTFLQNAIMTLYNATFSQIFEHITPMTAGIVVRVNTRNNVIDTAYTLAKIAATTIGSAVILRDVTLNGTAWTPVEVADSALAIVDDKDNWFVTDANKGLVTNNTGGSLEKNLLGSLADAGVRDAYFKVDRTANSGSVDYLKVNKNYNATDNYIVGKETVAGGDYGVMAEVAQIIKGRKDKSQQEGSS
Spacer protein (gp019) N 113 Escherichia Phage Johannrwettstein MSQYIPVPDTEWSTQTVTLDGTVFVIELKYKERLDRWFLTLSDVDGNVLLSEKKCLADQSITGRYVIPSLAGELFVERMYGTDLQPTRNNFGREKAFELNYYTQEDMRLMENL
Spacer protein (gp019) O 113 Escherichia Phage Johannrwettstein MSQYIPVPDTEWSTQTVTLDGTVFVIELKYKERLDRWFLTLSDVDGNVLLSEKKCLADQSITGRYVIPSLAGELFVERMYGTDLQPTRNNFGREKAFELNYYTQEDMRLMENL
LTF platform protein (gp025) S 100 Escherichia Phage Johannrwettstein MAFLNWSTDEVDADGNQLKVLPPPEIQATGLLRGEPMGRQWFNYILNYLLKKANGTVGEVRSFATEQPDLVANGWNLIKTETGTASTSTKNLYTYEFVGA
LTF platform protein (gp025) T 100 Escherichia Phage Johannrwettstein MAFLNWSTDEVDADGNQLKVLPPPEIQATGLLRGEPMGRQWFNYILNYLLKKANGTVGEVRSFATEQPDLVANGWNLIKTETGTASTSTKNLYTYEFVGA
LTF platform protein (gp025) U 100 Escherichia Phage Johannrwettstein MAFLNWSTDEVDADGNQLKVLPPPEIQATGLLRGEPMGRQWFNYILNYLLKKANGTVGEVRSFATEQPDLVANGWNLIKTETGTASTSTKNLYTYEFVGA
LTF platform protein (gp025) P 100 Escherichia Phage Johannrwettstein MAFLNWSTDEVDADGNQLKVLPPPEIQATGLLRGEPMGRQWFNYILNYLLKKANGTVGEVRSFATEQPDLVANGWNLIKTETGTASTSTKNLYTYEFVGA
LTF platform protein (gp025) Q 100 Escherichia Phage Johannrwettstein MAFLNWSTDEVDADGNQLKVLPPPEIQATGLLRGEPMGRQWFNYILNYLLKKANGTVGEVRSFATEQPDLVANGWNLIKTETGTASTSTKNLYTYEFVGA
LTF platform protein (gp025) R 100 Escherichia Phage Johannrwettstein MAFLNWSTDEVDADGNQLKVLPPPEIQATGLLRGEPMGRQWFNYILNYLLKKANGTVGEVRSFATEQPDLVANGWNLIKTETGTASTSTKNLYTYEFVGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-02-18
Deposition Author(s): Hodgkinson-Bean, J.