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FASTA Sequence PDB Format mmCIF Format
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9N9Q

Cryo-em structure of the rna-guided transcription complex

PDB DOI: 10.2210/pdb9n9q/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Flagellimonas Taeanensis , Synthetic Construct

Deposited: 2025-02-11
Deposition Author(s): Chang, L. , Hoffmann, F.T. , Sternberg, S.H. , Wiegand, T. , Xiao, R. , Xie, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.88 Å

9n9q
Literature

Cryo-em structure of the rna-guided transcription complex

Chang, L. , Hoffmann, F.T. , Sternberg, S.H. , Wiegand, T. , Xiao, R. , Xie, D.

Primary Citation of Related Structures: 9N9Q


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA non-template strand a 99 NA CTAGCGTTGTGGGATACCCGTTACACTAATTTTTCGGTTCACGATATCCTTTAGTCCCACAACTAACGACTACACTTTTTGGGTGACCGACCCAACACG
DNA template strand b 99 NA CGTGTTGGGTCGGTCACCCAAAAAGTGTAGTCGTTAGTTGTGGGACTAAAGGATATCGTGAACCGAAAAATTAGTGTAACGGGTATCCCACAACGCTAG
gRNA (85-MER) c 93 NA AUUUUGAGGGUGCUUGUACACCCAUAGGGUGAGGUUAAGAAUUACACUCACUAAGUGUGAACAACACAUACAACUUGUGGGAUAUACGCUAAC

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha D 330 Flagellimonas Taeanensis , Synthetic Construct MALLNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSSLEGFAITSVRIDGVEHEFSVVPGVVEDVTEIILNLKQVRFKRQIDDVESETVSISVSGKEQLTAGDFQKFISGYQVLNPDLVICNMGPKVSINMEIVIEKGRGYVPAEENKKSNAPLGSIAVDSVYTPVKNVKYSIENYRVEQKTDYEKLVFEIITDGSIHPKDALTEAAKVLIHHFMLFSDERITLEADEIAQTETYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFGKKSLTELEELVINKGLQFGMDLSKYKLDKD
DNA-directed RNA polymerase subunit alpha E 330 Flagellimonas Taeanensis , Synthetic Construct MALLNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSSLEGFAITSVRIDGVEHEFSVVPGVVEDVTEIILNLKQVRFKRQIDDVESETVSISVSGKEQLTAGDFQKFISGYQVLNPDLVICNMGPKVSINMEIVIEKGRGYVPAEENKKSNAPLGSIAVDSVYTPVKNVKYSIENYRVEQKTDYEKLVFEIITDGSIHPKDALTEAAKVLIHHFMLFSDERITLEADEIAQTETYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFGKKSLTELEELVINKGLQFGMDLSKYKLDKD
DNA-directed RNA polymerase subunit beta F 1269 Flagellimonas Taeanensis , Synthetic Construct MFTNTIERVNFASAKNIPEYPDFLDIQIKSFQDFFQLETKSDERGNEGLYNTFMENFPITDTRNQFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEFATDINGVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEVKVSKAGLKKVLGRKLAARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILEKEHIDEIIDADVKTILLHKENNAQSDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIEKLFFSDQRYSLGEVGRYRMNKKLGLDIGMDKEVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAKVNSMGFLETPYRKVVDGKVDVKEHIYLSAEEEEGMKIAQANIPLKDDGTIDREKVIARDEGDFPVVDPVEINYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPESPIVGTGLERQVATDSRVLINAEGDGVVEYVDAQKITIKYDRTEEERLVSFEEDSKTYELVKFRKTNQGTSINLKPIVRKGDKVKKGQVLCEGYATEKGELALGRNMKVAFMPWKGYNFEDAIVISEKVVREDIFTSVHIDEYALEVRDTKLGAEELTNDIPNVSEEATRDLDEYGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSRSIKDKRKRSEDKEAISRLEMDYEVKFQQLKDVLIEKLFGLVNGKTSQGVINDLGEEVLPKGKKYTIKMLNAVDDFAHLVGGSWTTDEDTNALVADLLHNYKIKLNDIQGNLRRDKFTISVGDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGLKLGQKYGTPIFDGATLDDINELTDKAGVPRFGHTYLYDGGTGQRFDQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASATLREILTVKSDDVIGRAKTYESIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE
DNA-directed RNA polymerase subunit beta' G 1432 Flagellimonas Taeanensis , Synthetic Construct MARIKDNNAPKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGPVKDYECACGKYKRIRYRGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKIGYLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEEIHKLDFLTEEEYLNILESLPSENQYLEENDPNKFIAKMGAECLIDLLARIDLEQLSYELRHKANTETSKQRKTEALKRLQVVEALRESQDNRENNPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPEMKLYECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIIDKKEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLACTAFNADFDGDQMAVHLPLGPEAILEAQLLMLASQNILNPANGSPITVPSQDMVLGLYYMTKEKRSTPEEPVIGEGLTFYSSEEVEIAFNERKVALNAIIKVRTKDFNEAGELVNKIIETTVGRVLFNTVVPEQAGYINTVLNKKSLRNIIGDILAVTDVPTTADFLDKIKTMGYEFAFKGGLSFSLGDIIIPKEKHEMIAEANEQVDGIMMNYNMGLITFNERYNQVIDVWTSTNAMLTELAMKRIREDKQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSILEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGIEVEALKKNEEVVETLGERILGRVSLHDVYNPLTEELILKAGQEISEADVKKVEAAPIEKVEVRSPLTCEAAQGICAKCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDSKLEAKFDGIAEIEDLRVVEGVDNGGGKSDIVISRTSEIKIVDAKTGITLSTNNIPYGSQLFVKNGEKITKGTVICQWDPYNGVIVSEFTGQIAYENIEQGMTYQVEIDEQTGFQEKVISESRNKRLIPTLLIKDGKGETIRSYNLPVGSHLMVDNGEKIKEGKILVKIPRKSAKAGDITGGLPRVTELFEARNPSNPAVVTEIDGVVSFGKIKRGNREIIIESKAGEVKKYLVKLSNQILVQENDYVRAGMALSDGSITPEDILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVRQMMRKVQIQDSGDTTFLENQLVHKDDFINENDEIFGKKVVEDAGDSERLKPGQIVTARQLRDENSILRREDKTLVTARDAVAATATPILQGITRASLQTKSFISAASFQETTKVLNEAAVNGKVDTLEGLKENVIVGHKIPAGTGMRDYDSIIVGSKEEYDEIMARKEEFKF
RNA polymerase Rpb6 H 108 Flagellimonas Taeanensis , Synthetic Construct MQDLKNTKAPVSTATLNRNEFDSKTGNIYEAISIASKRAVQINSDIKKELLEKLEEFATYSDSLEEVFENKEQIEVSKFYEKLPKPHALAVQEWLEDKIYYRNTEKDA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-02-11
Deposition Author(s): Chang, L. , Hoffmann, F.T. , Sternberg, S.H. , Wiegand, T. , Xiao, R. , Xie, D.