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FASTA Sequence PDB Format mmCIF Format
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9N3Y

Type iv-a1 crispr effector complex bound to dsdna and casding - loaded state

PDB DOI: 10.2210/pdb9n3y/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Pseudomonas Aeruginosa , Synthetic Construct

Deposited: 2025-02-01
Deposition Author(s): Kiernan, K.A. , Taylor, D.W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

9n3y
Literature

Type iv-a1 crispr effector complex bound to dsdna and casding - loaded state

Kiernan, K.A. , Taylor, D.W.

Primary Citation of Related Structures: 9N3Y


Proteins
Molecule Chains Sequence Length Organism Sequence
CCRISPR type AFERR-associated protein Csf3 (Cas5) B 220 Pseudomonas Aeruginosa , Synthetic Construct MVNLKVTIDLSNPMMEPGDLLHLDALLGALRVSRARAEHGDAINPRDYHYDLPLERYQAPSGDWVFKASAFKLKRQLPNQMWMQTGRLSIVEAARHRQSGYLQLRAGKPNPAGGPFKTSIYHRPIVQAELTAFCVGDQQGIEALLSECRQIGGKRGVGFGQVAGFKVEPVAETDCPWSWRALPADADPRLVTSEHARCIAAIRGPYWDRTLHVEALAPTP
CRISPR type AFERR-associated protein Csf5 (Cas6) H 232 Pseudomonas Aeruginosa , Synthetic Construct MFVKQVFFDLGARIHADEARALVAKLLDDTQPGLVSALMNYMPASKTSKTEFPLVQFSNFNQGFALLGFGEVGAQILSDATPIIHDAMAKLFASRGQGVVVQVSSRDVPLSCEKRPYGLQYTVAKMVVQKKHEHRERLANPETGKVFLEGLFLRSLERQAAAVGMVLPRDLVVSFKGAERVSSVKLRPDSTLAHGSLRHAVFEVNARLGGLWSVGFLLSKGFGHINTDLQLG
CRISPR type AFERR-associated protein Csf1 (Cas8) A 241 Pseudomonas Aeruginosa , Synthetic Construct MRYPSDIVDQVLKAGPDKGLLTWEGVDAACSHCSRPIQNGDLYSPSSVGAFFSDTRDLASTSRSICWRCVVLRKKPMLYGLSAAVVTQDGIYSISKDVNKAWLFTTPPPAPFLVVHSSSTMQHLSWRTPVTLDNRRIHVRYGPNLFIVRPEVVRKALSIADRVNEGQKKWVTPVYFDRKAAAMGHGLITRAGAEMLTQEEQEFFQSVTPGERWALSYLMHSKRPEPEVGECITEKVMTSLN
CRISPR type AFERR-associated protein Csf2 (Cas7) C 359 Pseudomonas Aeruginosa , Synthetic Construct MWSHPQFEKGAMQIEVTVRNITPIFSAAPGSNYITIDGTINPPPGVSRFPLVRTRMMYVAADVGDGVIKSVPLQIVPGNTMRSLLRRTMLKHVIEPALVEKGNKLSIGAYATAYSGNATGNPDGVPSSFDEIATMRAHPFIGLFGGGPRMLEGRLMVDSLYPIHTNAERILGAGYENEMMSGPITQVVWARRMDPILNLGSSEDVEVINGGAVAANGWIQDLLANSKAAASKKKKAAADEDESDGAAEENGRGLKAFNAHEVVIPGLKWVWRISLDRPTDAQVGLVLLALNKMTNERIAGGHSKDYGRFVIDGVSLNGEQVWSQSGITGGEQYFDAVAEAIDGLSSKEFEQFAQSAKEA
CRISPR type AFERR-associated protein Csf2 (Cas7) D 359 Pseudomonas Aeruginosa , Synthetic Construct MWSHPQFEKGAMQIEVTVRNITPIFSAAPGSNYITIDGTINPPPGVSRFPLVRTRMMYVAADVGDGVIKSVPLQIVPGNTMRSLLRRTMLKHVIEPALVEKGNKLSIGAYATAYSGNATGNPDGVPSSFDEIATMRAHPFIGLFGGGPRMLEGRLMVDSLYPIHTNAERILGAGYENEMMSGPITQVVWARRMDPILNLGSSEDVEVINGGAVAANGWIQDLLANSKAAASKKKKAAADEDESDGAAEENGRGLKAFNAHEVVIPGLKWVWRISLDRPTDAQVGLVLLALNKMTNERIAGGHSKDYGRFVIDGVSLNGEQVWSQSGITGGEQYFDAVAEAIDGLSSKEFEQFAQSAKEA
CRISPR type AFERR-associated protein Csf2 (Cas7) E 359 Pseudomonas Aeruginosa , Synthetic Construct MWSHPQFEKGAMQIEVTVRNITPIFSAAPGSNYITIDGTINPPPGVSRFPLVRTRMMYVAADVGDGVIKSVPLQIVPGNTMRSLLRRTMLKHVIEPALVEKGNKLSIGAYATAYSGNATGNPDGVPSSFDEIATMRAHPFIGLFGGGPRMLEGRLMVDSLYPIHTNAERILGAGYENEMMSGPITQVVWARRMDPILNLGSSEDVEVINGGAVAANGWIQDLLANSKAAASKKKKAAADEDESDGAAEENGRGLKAFNAHEVVIPGLKWVWRISLDRPTDAQVGLVLLALNKMTNERIAGGHSKDYGRFVIDGVSLNGEQVWSQSGITGGEQYFDAVAEAIDGLSSKEFEQFAQSAKEA
CRISPR type AFERR-associated protein Csf2 (Cas7) F 359 Pseudomonas Aeruginosa , Synthetic Construct MWSHPQFEKGAMQIEVTVRNITPIFSAAPGSNYITIDGTINPPPGVSRFPLVRTRMMYVAADVGDGVIKSVPLQIVPGNTMRSLLRRTMLKHVIEPALVEKGNKLSIGAYATAYSGNATGNPDGVPSSFDEIATMRAHPFIGLFGGGPRMLEGRLMVDSLYPIHTNAERILGAGYENEMMSGPITQVVWARRMDPILNLGSSEDVEVINGGAVAANGWIQDLLANSKAAASKKKKAAADEDESDGAAEENGRGLKAFNAHEVVIPGLKWVWRISLDRPTDAQVGLVLLALNKMTNERIAGGHSKDYGRFVIDGVSLNGEQVWSQSGITGGEQYFDAVAEAIDGLSSKEFEQFAQSAKEA
CRISPR type AFERR-associated protein Csf2 (Cas7) G 359 Pseudomonas Aeruginosa , Synthetic Construct MWSHPQFEKGAMQIEVTVRNITPIFSAAPGSNYITIDGTINPPPGVSRFPLVRTRMMYVAADVGDGVIKSVPLQIVPGNTMRSLLRRTMLKHVIEPALVEKGNKLSIGAYATAYSGNATGNPDGVPSSFDEIATMRAHPFIGLFGGGPRMLEGRLMVDSLYPIHTNAERILGAGYENEMMSGPITQVVWARRMDPILNLGSSEDVEVINGGAVAANGWIQDLLANSKAAASKKKKAAADEDESDGAAEENGRGLKAFNAHEVVIPGLKWVWRISLDRPTDAQVGLVLLALNKMTNERIAGGHSKDYGRFVIDGVSLNGEQVWSQSGITGGEQYFDAVAEAIDGLSSKEFEQFAQSAKEA
CRISPR-associated DEAD/DEAH-box helicase CasDinG L 748 Pseudomonas Aeruginosa , Synthetic Construct MASWSHPQFEKGAENLYFQSNAMKLAQGAFVDVIRIGALSPPTDQRSLWARTLLSEAVDQGLDSLPVPLQDVSTFTVTLQPALAVRLKALADQHNTPVSVYAAGLIEAMRRRSESGSVAEAPMELPADALPGEGAVREVLRPLLKQAAEKTAAGKIVFAEAATGTGKGRMIASLAAAAAIKGDTVVVSAPLAVTWQLVNDMKDIPEVRRVGLTLSLGRPNFISPQRTLEWAIDNERADLAAWIEGGGKPLSLRSMETSKVISHELCWLLEDALLLAEDLPADSLLLTSEDPADCPAQQLYVAMRSNYTEAGIILCSHFMLAAHTRMMQMRGLGNDEELDDEAPTGLSLPHFIDTLIVDEAHLLEQAFASVYTHTLRLRPLMRTIEGLGSRGRKPALDALKELFTQMQVASARSTNTSLNVPLSDVPELIPALKDTVKTLGALPTKGMSRDARSVIRIATRAANDALSGHSRLRIEVTPVHSYPMLLSGRSNLQRALLGLWNATGGATLVSATLFTTGDNGSLTRWKLEVPTERAAFLPPVHPAWTTAPVLLHKEFCAHEPDDSPEWATECAQTIQGVASTAQGGTLVLCTSYQNTELLAGRLGAALGDRLIVQSKTSSAATCLAQFKAKHKAGIRPVWLGLGAAWTGIDLSDHSLPDNPELDRLLSDLVITRIPVGQNRSLTHERRTAIGGFRIISQEAAWHFRQGLGRLVRRPGVTHKNLWVLDARIYGGAAWVAPFRQILDRYKKA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA (61-MER) i 61 NA GUGAACGGUGGAGCAACACCUGAAGGAAGGCUUGAUGAGCGUGUUCCCCGCAUACGCGGGG
DNA, non-target strand (48-MER) j 54 NA AACTCACGCTAGTGGAGCAACACCTGAAGGAAGGCTTGATGAGCAAGTGCGGCA
DNA, target strand (48-MER) k 54 NA TGCCGCACTTGCTCATCAAGCCTTCCTTCAGGTGTTGCTCCACTAGCGTGAGTT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-02-01
Deposition Author(s): Kiernan, K.A. , Taylor, D.W.