9N2D
Cryo-em structure of an extended f. johnsoniae bam complex, composite map
PDB DOI: 10.2210/pdb9n2d/pdb
Classification: MEMBRANE PROTEIN Organism(s): Flavobacterium Johnsoniae Uw101
Deposited: 2025-01-28 Deposition Author(s): Deme, J.C. , Lea, S.M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
Cryo-em structure of an extended f. johnsoniae bam complex, composite map
Primary Citation of Related Structures: 9N2D
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA uptake lipoprotein-like protein | F | 264 | Flavobacterium Johnsoniae Uw101 | MKKIVSLLIVAALFCSCSEYQKALKNEDVAAKFEVATKMYDAGKYNKAIRLFEQLAPTYRGKPQAEKLFYMFSQSYYKTKQYYLAGYQFESFVSGYPRSEKVQEAAFLGAYSYSKLAPVYSLDQADTVKALDKLQAFIDNYPNSEYLAQANESVKILNGKLEKKAYENAKGYNTISDYKSALVAFDNFIADFPGTPLKEDALFYKYDSAYQLAINSVPSKMEERLHVAQTAYANLMKYKSDTKYKEKADQMNARVETDLQKFTK |
| Surface antigen (D15) | A | 900 | Flavobacterium Johnsoniae Uw101 | MLQKRIPQIICTLLLLGSFSQIKAQDRVPFDQGKKYTLAKVSVVGKISFNEQTVVTFSGLQKGQEITVPGEEITSAIKKLGKLGLFDEIAFYINKVENDSIYLDLNIVELPKLNEVKITGVKKSKVEGLIKDNNLTKNKIVNENLITTTKNYIENKYKKDGFYNTKVVITTTPDTTAGNQVNMLVRVDKGDKVKISSIDFTGNKQLSDSKLRAAMKDTKQKNVLRVFKASKFIPEKYKTDLEKVIASYKEKGYRDARIIYDSVIYNKKKNMLAIKIDVEEGNKYYFGNIKFLGNTVYSDQQLNRYLGIKKGETYNGVLLEKRIADNTKPDGEDITNLYQNNGYLFSKINAVEVKTVNDTIDFEIRITEGPIAYFNKIYVTGNDKTNDHVIYRELRTKPGNKYSKEELVRTIREIGQLGFFDPESIKPEFRNVDPAAGTVDIEYQLVEKGSSQVELQGGYGGGGFIGTLGLSFNNFSARKLFDKDAYKPLPMGDGQKVALRLQGSTYFQTYSLSFSEPWFGGKKPVQFSSSISYSKQFNYNYSSRDVNRNQSFNIFTVQVGLAKRLTVPDDYFVLSQSVSYQHYDLNNYYTGLFTFGNGASRNLAYTIGLSRSNKGVNPIFPTYGSEFSISAKVTPPYSLFNNINYGDLQNQKEYKTQYTGTTTTTGIDGQAINPGDYTKTETVNGQSGTVSVGSDYKSADTDVGKVDQKKYNWLEYYKVKFKADWYTKIYGKLVLRTLTEFGFLGAYDQSRGVVPFERFYLGGDGMANYSMDGRETIQLRGYPNNSLTPIIEDRNSSRYGQQIGATIYNKFSMELRYPITLKSSASIYALTFLEAGSSYPTFKDYNPFDLNRSAGAGLRVFMPAFGLLGIDFGYGFDALPGSTTNKANGWETHFIIGQQF |
| Hypothetical lipoprotein | C | 517 | Flavobacterium Johnsoniae Uw101 | CDKDFNAIGGDLIGDDHFGLESEKYDVLSYNQEVTSVQSNVLPTSALGIYSNPVFGETTANYVTQVALVAYAPSIGEDPVIESAVLSIPYFSHVTANNTDGSHTYELDSIYGPANGKLKLSVYESGYQMRSSFPSNGTELPQYYYTSQNSTFDQAKVGTRLNDDLTKPFQNDQFFFSSEEYKTVTKDSNDKETTTYTAPEMRLNLNSAFFQDKILKAPASKIASTDVFQEYFRGLYFKVEKADGSPSNMALMDFSKGKITITYKAKTDITTDAPETTEERTIVINLVNPTSSGGTANLLQDAKSAGYSGAISSSNVNKTEGDERLYIKGGQGSAAVIKLNDFASKLDDIRAKNWKVNEANLIFNIDSDLMTGADEPKRVYLYDLTNNVPLADYYADQTTSLTVGDTKGAKYVFGGLINLGDNKRGKTYKIRITEYIRNLIKDKTAKNVNLGLVVTESIGITTSNFLENRIVLQPNEYFSQVPRASIMNPLGTILYGGKASVPDDKRLRLEVYYTKPN |
| Long-chain fatty acid transport protein | B | 409 | Flavobacterium Johnsoniae Uw101 | MIKKIIISACLLISFVSFAQQGTASPYSFYGIGDIKFKGTLEYRSMAGVAVEQDSIHLNIENPASYASLMQTTFTVGGTFGTSTLKSNTGSAKAQRTTFDYLAVGIPVGKFGVSFGLIPLSSVGYKILDDNTATEGAVSSQLSGKGGINKVYFGVGYKIKPHWTIGADVQYNFGKITTTSIEQVTGVQNGTSESNASTLSGANFDLGTMYQTKIYKKVNLFTSLSYTFSSNLNSENVREINVSGDPDPYAYPASTTKLKLPSRVIIGAGIGESRKWLVGTTLAFQGEGQLTNYYNAMDNVRYENYAKYAIGGYYIPNYTSFTSYLSRITYRAGLKYEKIGLIVNNESIKDVGMTLGAGIPIPGYFSNVNIGIEFGKKGTVSSNLVQENYVNFSVGFSFNDKWFVKSKFN |
| Hypothetical lipoprotein | D | 388 | Flavobacterium Johnsoniae Uw101 | MNKFKYYFVLLLAGLAIVSCNKKDDDEEIVPLRDYQEQYNTDNANIEEYLNTYFITVTDAPGEQTDQDVTFTKITDPSTQPSIMSYLNSPTFPKLLKREVPMHGIVYQMYYLVLREGTGTSPMNTDGAFTSYRGEYLTRVAKTDTEAEHLSTTFFEQVLFPTKALDLYGTIIGWSEAFPQFKTGTATMKPDGSMKYENFGAGVLFIPSGLGYYGSGASAIPAYSPLIFSIKLYDLTRLDHDLDGVFDFEEDINGDGYVYDFRNTTEYPTPPANQYDDDTDKDGIADFLDSDDDGDGYSTLFEITKPTGTEFLGGLSKYYPYNPVSDNPATPNYDETEKYGIPRRPTGELTNPNLPESINNPRKFIEDDYLAAGRKRIHLDNTYPYKKN |
| CarboxypepD_reg-like domain-containing protein | E | 249 | Flavobacterium Johnsoniae Uw101 | MKNKLGVFVVCLFCQIMLGQNGTRKSLHGQVTNKSLAIESGYVMNINAKSRTFIGPGGLFDILAQPKDTLLFTGIAFQSKKIVLTEKDCSQILFSVSLDLVSNELKEVLVRKDLKVKSLDSNTQKYVDMQFEDDRQSTAKNTVMYSDQTIKYGTDFVRIFKDVKKLLSKNNEKEEVISDIAFVEYSKANFKPDFYTKTLGLKPDEVDLFLMFCSNDPESKRHLNEDQKFELIDFLINKNAEFKKVNAAQ |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-01-28 Deposition Author(s): Deme, J.C. , Lea, S.M.