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FASTA Sequence PDB Format mmCIF Format
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9ML8

Crystal structure of the sars-cov-2 rbd in complex with the rabbit m8b-b1 fab

PDB DOI: 10.2210/pdb9ml8/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-12-18
Deposition Author(s): Bjorkman, P.J. , Fan, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Literature

Crystal structure of the sars-cov-2 rbd in complex with the rabbit m8b-b1 fab

Bjorkman, P.J. , Fan, C.

Primary Citation of Related Structures: 9ML8


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 212 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLHHHHHH
Spike protein S1 B 212 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLHHHHHH
Spike protein S1 C 212 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLHHHHHH
Spike protein S1 D 212 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLHHHHHH
M8b-B1 heavy chain E 235 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 QSLEESGGDLVKPGASLTLTCTASGFSFSGSYYMCWVRQAPGKGLEWIACIYDGSYDGSSDNAYYASWAKGRFTISKTSSTTVTLQMTSLTAADTATYFCARGVYFYAGHFVIMRYFVLWGPGTLVTVSSGQPKAPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
M8b-B1 heavy chain H 235 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 QSLEESGGDLVKPGASLTLTCTASGFSFSGSYYMCWVRQAPGKGLEWIACIYDGSYDGSSDNAYYASWAKGRFTISKTSSTTVTLQMTSLTAADTATYFCARGVYFYAGHFVIMRYFVLWGPGTLVTVSSGQPKAPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
M8b-B1 heavy chain M 235 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 QSLEESGGDLVKPGASLTLTCTASGFSFSGSYYMCWVRQAPGKGLEWIACIYDGSYDGSSDNAYYASWAKGRFTISKTSSTTVTLQMTSLTAADTATYFCARGVYFYAGHFVIMRYFVLWGPGTLVTVSSGQPKAPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
M8b-B1 heavy chain P 235 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 QSLEESGGDLVKPGASLTLTCTASGFSFSGSYYMCWVRQAPGKGLEWIACIYDGSYDGSSDNAYYASWAKGRFTISKTSSTTVTLQMTSLTAADTATYFCARGVYFYAGHFVIMRYFVLWGPGTLVTVSSGQPKAPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
M8b-B1 light chain F 217 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 AQVLTQTPSSVSAAVGGTVSISCQSSQSVYSNYLSWYQQKPGQPPKLLIYDASTLASGVPSRFKGSGSGTQFTLTISGVQCDDAATYYCQGSYYSSDWYPFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
M8b-B1 light chain L 217 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 AQVLTQTPSSVSAAVGGTVSISCQSSQSVYSNYLSWYQQKPGQPPKLLIYDASTLASGVPSRFKGSGSGTQFTLTISGVQCDDAATYYCQGSYYSSDWYPFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
M8b-B1 light chain N 217 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 AQVLTQTPSSVSAAVGGTVSISCQSSQSVYSNYLSWYQQKPGQPPKLLIYDASTLASGVPSRFKGSGSGTQFTLTISGVQCDDAATYYCQGSYYSSDWYPFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
M8b-B1 light chain Q 217 Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 AQVLTQTPSSVSAAVGGTVSISCQSSQSVYSNYLSWYQQKPGQPPKLLIYDASTLASGVPSRFKGSGSGTQFTLTISGVQCDDAATYYCQGSYYSSDWYPFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-12-18
Deposition Author(s): Bjorkman, P.J. , Fan, C.