9M5A
Cryo-em structure of psii d1-v185t from thermosynechococcus vestitus bp-1
PDB DOI: 10.2210/pdb9m5a/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thermosynechococcus Vestitus Bp-1
Deposited: 2025-03-05 Deposition Author(s): Akita, F. , Jiang, H.W. , Kato, K. , Li, H.J. , Nakajima, Y. , Shen, J.R. , Sugiura, M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 1.88 Å
Cryo-em structure of psii d1-v185t from thermosynechococcus vestitus bp-1
Akita, F. , Jiang, H.W. , Kato, K. , Li, H.J. , Nakajima, Y. , Shen, J.R. , Sugiura, M.
Primary Citation of Related Structures: 9M5A
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 3 | A | 360 | Thermosynechococcus Vestitus Bp-1 | MTTVLQRREQLNLWEQFCSWVTSTNNRLYVGWFGVLMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLIGVFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLTFQAEHNILMHPFHQLGVAGVFGGALFSAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIGIWFTALGISTMAFNLNGFNFNHSVVDAQGNVINTWADIINRANLGMEVMHERNAHNFPLDLASAESAPVAMIAPSING |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Vestitus Bp-1 | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 36 | Thermosynechococcus Vestitus Bp-1 | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS |
| Photosystem II reaction center protein T | T | 32 | Thermosynechococcus Vestitus Bp-1 | METITYVFIFACIIALFFFAIFFREPPRITKK |
| Photosystem II extrinsic protein U | U | 134 | Thermosynechococcus Vestitus Bp-1 | MQRLGRWLALAYFVGVSLLGWINWSAPTLAATASTEEELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Photosystem II extrinsic protein V | V | 163 | Thermosynechococcus Vestitus Bp-1 | MLKKCVWLAVALCLCLWQFTMGTALAAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein X | X | 41 | Thermosynechococcus Vestitus Bp-1 | MTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL |
| Photosystem II reaction center protein Psb30 | Y | 46 | Thermosynechococcus Vestitus Bp-1 | MGIFNGIIEFLSNINFEVIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Cytochrome b559 subunit alpha | E | 84 | Thermosynechococcus Vestitus Bp-1 | MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Photosystem II extrinsic protein O | O | 272 | Thermosynechococcus Vestitus Bp-1 | MKYRILMATLLAVCLGIFSLSAPAFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Vestitus Bp-1 | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 510 | Thermosynechococcus Vestitus Bp-1 | MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRRKEAV |
| Photosystem II CP43 reaction center protein | C | 461 | Thermosynechococcus Vestitus Bp-1 | MVTLSSNSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 352 | Thermosynechococcus Vestitus Bp-1 | MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit beta | F | 45 | Thermosynechococcus Vestitus Bp-1 | MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 66 | Thermosynechococcus Vestitus Bp-1 | MARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
| Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Vestitus Bp-1 | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
| Photosystem II reaction center protein J | J | 40 | Thermosynechococcus Vestitus Bp-1 | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
| Photosystem II reaction center protein K | K | 46 | Thermosynechococcus Vestitus Bp-1 | MIDALVLVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-03-05 Deposition Author(s): Akita, F. , Jiang, H.W. , Kato, K. , Li, H.J. , Nakajima, Y. , Shen, J.R. , Sugiura, M.