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FASTA Sequence PDB Format mmCIF Format
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9LQ7

Cryo-em structure of ntr-bound type iii-b crispr-cas effector complex

PDB DOI: 10.2210/pdb9lq7/pdb

Classification: IMMUNE SYSTEM/RNA
Organism(s): Bacteroides Fragilis , Synthetic Construct

Deposited: 2025-01-28
Deposition Author(s): Chen, Z. , Duan, B. , Jin, X. , Zhao, B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.81 Å

9lq7
Literature

Cryo-em structure of ntr-bound type iii-b crispr-cas effector complex

Chen, Z. , Duan, B. , Jin, X. , Zhao, B.

Primary Citation of Related Structures: 9LQ7


Proteins
Molecule Chains Sequence Length Organism Sequence
Cmr1 A 469 Bacteroides Fragilis , Synthetic Construct MNQLTAILKQHTPMIHFQHNESGATLRASEVKPLLDKFILTKLGNGDIREGRLYAKKNNWLIDNEKNYALNYKLSISLQKKSRLEYLITSSTFPLPTERPSNFFTIQNSPYFAQEKCVGINTNSTIILKKSNSDPRKKEAEFKEKNWSQIDKKGLEWQDFTIKIFSLKGDLINKIQTYLPAFFICHNFGTRNNKGFGSFTVEYINNQKNICNVEDTLKENFAFVYKKKIALSRQSTLDFIYIYNQIFSTIKKDYQILKSGYNFRNEYIKSLLFCYFVSKYPNYRWEKRKMKQLIKARGYELKGDHSPISGIRENDNSWNDPNPNGYNYAYIRAILGLAEQYEFQLETPYQKAIVKIKSANNCISRYKSPLLFKIINNSIYLVGNEINTEILNKPFQYSYIEQTKNKNMRTGKSEITERTMHINEIEMNYKNRINYHYTPTSFSLIDFMQYAMSYKKNGKNILNYIPLKQ
Type III-B CRISPR-associated protein Cas10/Cmr2 B 600 Bacteroides Fragilis , Synthetic Construct MKYIAITLGPITRTIEMAESTKELWAASYFFSYLAKKIVEPFVKKNRTFQLPLINEEMQKPHCGAGLFPDRYIFKSEPGDLELLKQHSDQVLIEIAGHIASPSLPGTAKDVSQIYHYLKSYIKIYFIERTLESDDPHVVIPACEKYLNIIENQETFPEQEETMISHQKSDFLKFLITNVNGKIYRKDKNSIPRFTGSFLTRDAFGDMNGERLFESILEISASELNINIQQKALEVITANEKNKGEKYSDQIWDAEEIILNDNKAQLRPYHKYIAIIKSDGDSMGETIKSMGAYNIPITQLSKALLSFNIESINEIVAYGGKPIFIGGDDLLCFAPVCCNGNNVFNLVEKLSTCFDQCINQHLQQYINACSEAQRPLPSLSFGISITYHKYPMFEALHTTDYLLEMVAKDNLFKYTLSNKNILNENMKRFILKNKLAFSLQKHSGQIYHTAMSKKGKSYVKFNMLLQKYILKNKDMSKTQESEKFLSSVIQMIRAHAEILQIILQNEDKRTEMLKNYFDNNFNESCHLGYTGLFEDIQTLLCLRYQENIQDYQNRNEIIQQNTILTSDEKEILIVSPAMDAIHTIFTALQFIHFINYNKDE
CRISPR-associated protein Cmr3 C 423 Bacteroides Fragilis , Synthetic Construct MSHHHHHHHHDGKPIPNPLLGLDSTGSDQTENSGENLYFQGANAMNRHYLITLTPMDWFFFGGERTLDDGKSADYISHSNKFPQQSALLGMIRYQLLKQHNLLSQFPYTENKPTEKEIMKTLIGEQSFRMTERKAKSLGLGVIKQISPLMLIECKDDTSSRSIYFPLPLDDGYKVSFNETSNEDKVFYNGIECPIPNVYPASEEQDSGNQKRKFFDHKTYNNYLFWCTQGNNQIKKLLSDEIWISKMQIGITKHVEEGEDNDKSFYKQEFLQLKKSFIYAFYITLSGESELSSDIIQLGGQRSVFRMEVESIEENSDIQEKYQTAAQFLTQSDRLLILSPTYVDNLKELSALCNFMWSDSIVFRNIQTTNASNFYGKPIKSSSKYHFLKPGSVLYFKQGKRKEVEKLLMDYTYLRLSGYNIYI
Type III-B CRISPR module RAMP protein Cmr4 D 279 Bacteroides Fragilis , Synthetic Construct MTTRMYVINTLSNMHVGSGEVNYGVIANLIQRDSVTNLPNINSSGLKGAIREYFKENEDLVRELFGSAPRDEKTLPGKVRFFEANLLSMPVRSDKVPFLMAISDEVLQELITKMKFFNCEEATQYISHLSTLLDNIKTQAQGTDFAYVFDPLLQGAIIEEVSIRATCPSHIPLQPSLKKLLGDRLVILSHKYFSILSDDNHLPVLSRNNLENGQSANLWYEQVLPRYSRLYFMLMDGNAQSEYLKKFRDTLCTPSTIIQIGANASIGYGYCQISELSPF
Type III-B CRISPR module RAMP protein Cmr4 E 279 Bacteroides Fragilis , Synthetic Construct MTTRMYVINTLSNMHVGSGEVNYGVIANLIQRDSVTNLPNINSSGLKGAIREYFKENEDLVRELFGSAPRDEKTLPGKVRFFEANLLSMPVRSDKVPFLMAISDEVLQELITKMKFFNCEEATQYISHLSTLLDNIKTQAQGTDFAYVFDPLLQGAIIEEVSIRATCPSHIPLQPSLKKLLGDRLVILSHKYFSILSDDNHLPVLSRNNLENGQSANLWYEQVLPRYSRLYFMLMDGNAQSEYLKKFRDTLCTPSTIIQIGANASIGYGYCQISELSPF
Type III-B CRISPR module RAMP protein Cmr4 F 279 Bacteroides Fragilis , Synthetic Construct MTTRMYVINTLSNMHVGSGEVNYGVIANLIQRDSVTNLPNINSSGLKGAIREYFKENEDLVRELFGSAPRDEKTLPGKVRFFEANLLSMPVRSDKVPFLMAISDEVLQELITKMKFFNCEEATQYISHLSTLLDNIKTQAQGTDFAYVFDPLLQGAIIEEVSIRATCPSHIPLQPSLKKLLGDRLVILSHKYFSILSDDNHLPVLSRNNLENGQSANLWYEQVLPRYSRLYFMLMDGNAQSEYLKKFRDTLCTPSTIIQIGANASIGYGYCQISELSPF
CRISPR type III-B/RAMP module-associated protein Cmr5 G 136 Bacteroides Fragilis , Synthetic Construct MKISKKQIEYAIEALRANNIITNDNQYPKVFKGYISSFGAAVIQSGLIPAIIFFENEDNDANADRHKIIGVLKDIINAMRQQYTVTDATILVSSQIPANYSMAQYIIEHGNTDQLLKEITEAAVAMKLALRMYKSE
CRISPR type III-B/RAMP module-associated protein Cmr5 H 136 Bacteroides Fragilis , Synthetic Construct MKISKKQIEYAIEALRANNIITNDNQYPKVFKGYISSFGAAVIQSGLIPAIIFFENEDNDANADRHKIIGVLKDIINAMRQQYTVTDATILVSSQIPANYSMAQYIIEHGNTDQLLKEITEAAVAMKLALRMYKSE
RAMP superfamily protein I 314 Bacteroides Fragilis , Synthetic Construct MPKNYTLQNASNLGWLFYKDYYRQEPNVDFISTQGKESDTTADFFRKTNQRITAYQLNSESPLVAAFNNHFGTPLQLKTIYPGLITGSGLPHQTGSKGEFKLGFQFDYTTGLPYIPGSSIKGTLRSMFPFSLKDKGSTKRILPEYRKERMEYIRDLIIEVTNINEISDTEIQALEYAIFTNSTPSGKTIEFSLEEKDVFYDAFVADSKDGVMLSDDYITPHGENPLKDPKPILFLKIRPDVTINFYFKLCTTHLYKEKVCSSKQIEEIKKQNDFSSSDYKMITAHQKRNLFEKILLCIGIGAKTNIGYGQLKKL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
NTR k 49 NA CACAAGGGACGCCACUUCAUGGAAAUAAAUCACUCACGAAUGUCUUAAU
crRNA j 49 NA AUUAAGACAUUCGUGAGUGAUUUAUUUCCAUGAAGUGGCGUCCCUUGUG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-01-28
Deposition Author(s): Chen, Z. , Duan, B. , Jin, X. , Zhao, B.