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FASTA Sequence PDB Format mmCIF Format
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9LOX

Cryo-em structure of the chromatin remodeler rad26 bound to the nucleosome at shl6

PDB DOI: 10.2210/pdb9lox/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Komagataella Phaffii , Synthetic Construct

Deposited: 2025-01-23
Deposition Author(s): Fukushima, Y. , Kagawa, W. , Kinoshita, C. , Kurumizaka, H. , Ogasawara, M. , Takizawa, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

9lox
Literature

Cryo-em structure of the chromatin remodeler rad26 bound to the nucleosome at shl6

Fukushima, Y. , Kagawa, W. , Kinoshita, C. , Kurumizaka, H. , Ogasawara, M. , Takizawa, Y.

Primary Citation of Related Structures: 9LOX


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 140 Komagataella Phaffii , Synthetic Construct GSHMARTKQTARKSTGGKAPRKQLASKAARKSAPSAAGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDILLARRLRGERS
Histone H3 E 140 Komagataella Phaffii , Synthetic Construct GSHMARTKQTARKSTGGKAPRKQLASKAARKSAPSAAGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDILLARRLRGERS
Histone H4 B 106 Komagataella Phaffii , Synthetic Construct GSHMSGRGKGGKGLGKSGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISALIYEEVRAVLKTFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
Histone H4 F 106 Komagataella Phaffii , Synthetic Construct GSHMSGRGKGGKGLGKSGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISALIYEEVRAVLKTFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
Histone H2A C 133 Komagataella Phaffii , Synthetic Construct GSHMSGGKGKASSAEKASTSRSSKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIQSELLPKKSAKAKASQEL
Histone H2A G 133 Komagataella Phaffii , Synthetic Construct GSHMSGGKGKASSAEKASTSRSSKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIQSELLPKKSAKAKASQEL
Histone H2B D 135 Komagataella Phaffii , Synthetic Construct GSHMAPKAEKKPASKAPAEKKPTAGKKTSSSSEPKKRSKVRKESYASYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLASYNKKSTISAREIQTAVRLILPGELSKHAVSEGTRAVTKYTSSTQA
Histone H2B H 135 Komagataella Phaffii , Synthetic Construct GSHMAPKAEKKPASKAPAEKKPTAGKKTSSSSEPKKRSKVRKESYASYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASKLASYNKKSTISAREIQTAVRLILPGELSKHAVSEGTRAVTKYTSSTQA
DNA repair protein K 1094 Komagataella Phaffii , Synthetic Construct GPLGSHMNEEPDDLTSLGVELVGQDTLEHQIASMADTAMLERDKELELKRLEKTKSQIQKWQSKQRSLESKINSRNTKISERERFRKELKDIEENELKVLRDDLKEINTRLQETMKASSLKAKETLDEVEQLPNETKKDFLIRTGKITAFGSVNAFTQDNPEAPVEKSHQSLIAPGIDDDDDYVYPGEIEEIEEIETENESDDQAAIISSKKRKRARSIEHDDVYVNSDSTEDEYDTQTTRQSKDEIHNIDDGDDAFYNARLNAWVTKRSQKREVDANPDEEEWFKPHPTKQDAILDDDYRLPGDVYPALFDYQKTCVQWLWELYLQKVGGILGDEMGLGKTVQIISFIAGLHYTKKLNKPVIVVCPATVLRQWCNEFHRWWPPLRVVILHAIGTGLSGSRTSLQNEASIEKLLEEEEYGSTKSLASLKAESRVKELIDSVFTRGHVIITTYVGLRIYSKHLLKRDWGYAILDEGHKIRNPNSDISLTCKQLRTPNRVILSGTPIQNNLTELWSLFDFIFPGRLGTLPVFQNQFAIPINVGGYANATNLQVQVGYKCAVTLKDLISPYLLRRVKADVAKDLPKKSEMVLFCKLTAPQHALYEKFLRSDELSRILQGKRQVLYGIDILRKICNHPDLVDVHAKRRSKKDPTYGSASKSGKMQVVKKLLELWKSQGHKTLLFTQTRQMLDILESFLERLNAKGAEEEDFVPFKFLRMDGTTSIGVRQSLVDVFNNDPSYNVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDVQARERAWRLGQKKDVTIYRLMIAGSIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMNELQDLFTLGDPDEKGTETGDMFNGMEYNFKGTKPRHSQKLSNRERSEEPQDDLVKLAQINGVSGLQEFDGSKDEQMDSTSRQEEELMSGLFASSGVHSALQHDSIMDSTEPEQNEAELEARRIAAEAANSLRESRKLARKSKIGVPTWTGKFGSAGKILNKQRFRDNASGVSSSSILQSIRAKRDLDTKKKERPDFNNEDNDRKLLIRRINDFMLVQNGYKADSQTILNSFKEINNIILMRSMLKQICKWDSKEKVWILKDEYVE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (169-MER) i 169 NA CTGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCAGGCCTTGTGTCGCGAAATTCATAGA
DNA (169-MER) j 169 NA TCTATGAATTTCGCGACACAAGGCCTGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-01-23
Deposition Author(s): Fukushima, Y. , Kagawa, W. , Kinoshita, C. , Kurumizaka, H. , Ogasawara, M. , Takizawa, Y.