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9LNJ

Crystal structure of vanc21 in complex with its target dna (5-bromouridine substituted).

PDB DOI: 10.2210/pdb9lnj/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Arabidopsis Thaliana , Synthetic Construct

Deposited: 2025-01-21
Deposition Author(s): Hirano, H. , Itoh, Y. , Kakutani, T. , Nureki, O. , Shihoya, W. , Tanaka, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

9lnj
Literature

Crystal structure of vanc21 in complex with its target dna (5-bromouridine substituted).

Hirano, H. , Itoh, Y. , Kakutani, T. , Nureki, O. , Shihoya, W. , Tanaka, Y.

Primary Citation of Related Structures: 9LNJ


Proteins
Molecule Chains Sequence Length Organism Sequence
VANC21 A 383 Arabidopsis Thaliana , Synthetic Construct MGHHHHHHHHHHSSGENLYFQGSHAMQPLGMYFPASEYTKKMKLATRCYISEVLKTFADLEHPLTNVEKNYFMEHPSFKHIYHLPSGYTHKLMGMWMLFLRTASIEKKKEVWFVVNGVPIRYGIREHALISGFNCKAYPANYQSAGNMNFANRYFKTGVIRREDVKTKLMEMEPARSKDRLRMAVLYFLTSIIAVPTKTGERASPIDDFCVRAASDLTFCKTFPWGRYSFEYMLKSISHTLDHFNGVVPNTQSPWPVPGFCVPLEFLAFEAIPSLRERFIEEKEGSHAGCPRMCKVSFKRTEMKGFTLEQINHVLGTTEVIESIIREKAEEVPLLAEITGVEDDVDKHDVVVDSWMKRLGQGREIRFEEVYNEDVHARMEAPN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
VANC21 binding DNA fragment (motif strand) b 13 NA XCCAGTATTACUU
VANC21 binding DNA fragment (complementary strand) c 13 NA XAGTAATACTGGU
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-01-21
Deposition Author(s): Hirano, H. , Itoh, Y. , Kakutani, T. , Nureki, O. , Shihoya, W. , Tanaka, Y.