9LM3
Cryo-em structure of retron eco2
PDB DOI: 10.2210/pdb9lm3/pdb
Classification: RNA BINDING PROTEIN/DNA/RNA Organism(s): Escherichia Coli
Deposited: 2025-01-18 Deposition Author(s): Guan, Z.Y. , Wang, C. , Wang, Y.J. , Zou, T.T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.6 Å
Cryo-em structure of retron eco2
Guan, Z.Y. , Wang, C. , Wang, Y.J. , Zou, T.T.
Primary Citation of Related Structures: 9LM3
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Retron Ec67 protein | A | 596 | Escherichia Coli | MTKTSKLDALRAATSREDLAKILDVKLVFLTNVLYRIGSDNQYTQFTIPKKGKGVRTISAPTDRLKDIQRRICDLLSDCRDEIFAIRKISNNYSFGFERGKSIILNAYKHRGKQIILNIDLKDFFESFNFGRVRGYFLSNQDFLLNPVVATTLAKAACYNGTLPQGSPCSPIISNLICNIMDMRLAKLAKKYGCTYSRYADDITISTNKNTFPLEMATVQPEGVVLGKVLVKEIENSGFEINDSKTRLTYKTSRQEVTGLTVNRIVNIDRCYYKKTRALAHALYRTGEYKVPDENGVLVSGGLDKLEGMFGFIDQVDKFNNIKKKLNKQPDRYVLTNATLHGFKLKLNAREKAYSKFIYYKFFHGNTCPTIITEGKTDRIYLKAALHSLETSYPELFREKTDSKKKEINLNIFKSNEKTKYFLDLSGGTADLKKFVERYKNNYASYYGSVPKQPVIMVLDNDTGPSDLLNFLRNKVKSCPDDVTEMRKMKYIHVFYNLYIVLTPLSPSGEQTSMEDLFPKDILDIKIDGKKFNKNNDGDSKTEYGKHIFSMRVVRDKKRKIDFKAFCCIFDAIKDIKEHYKLMLNSLEHHHHHHHH |
| Retron Ec67 protein | E | 596 | Escherichia Coli | MTKTSKLDALRAATSREDLAKILDVKLVFLTNVLYRIGSDNQYTQFTIPKKGKGVRTISAPTDRLKDIQRRICDLLSDCRDEIFAIRKISNNYSFGFERGKSIILNAYKHRGKQIILNIDLKDFFESFNFGRVRGYFLSNQDFLLNPVVATTLAKAACYNGTLPQGSPCSPIISNLICNIMDMRLAKLAKKYGCTYSRYADDITISTNKNTFPLEMATVQPEGVVLGKVLVKEIENSGFEINDSKTRLTYKTSRQEVTGLTVNRIVNIDRCYYKKTRALAHALYRTGEYKVPDENGVLVSGGLDKLEGMFGFIDQVDKFNNIKKKLNKQPDRYVLTNATLHGFKLKLNAREKAYSKFIYYKFFHGNTCPTIITEGKTDRIYLKAALHSLETSYPELFREKTDSKKKEINLNIFKSNEKTKYFLDLSGGTADLKKFVERYKNNYASYYGSVPKQPVIMVLDNDTGPSDLLNFLRNKVKSCPDDVTEMRKMKYIHVFYNLYIVLTPLSPSGEQTSMEDLFPKDILDIKIDGKKFNKNNDGDSKTEYGKHIFSMRVVRDKKRKIDFKAFCCIFDAIKDIKEHYKLMLNSLEHHHHHHHH |
| Retron Ec67 protein | I | 596 | Escherichia Coli | MTKTSKLDALRAATSREDLAKILDVKLVFLTNVLYRIGSDNQYTQFTIPKKGKGVRTISAPTDRLKDIQRRICDLLSDCRDEIFAIRKISNNYSFGFERGKSIILNAYKHRGKQIILNIDLKDFFESFNFGRVRGYFLSNQDFLLNPVVATTLAKAACYNGTLPQGSPCSPIISNLICNIMDMRLAKLAKKYGCTYSRYADDITISTNKNTFPLEMATVQPEGVVLGKVLVKEIENSGFEINDSKTRLTYKTSRQEVTGLTVNRIVNIDRCYYKKTRALAHALYRTGEYKVPDENGVLVSGGLDKLEGMFGFIDQVDKFNNIKKKLNKQPDRYVLTNATLHGFKLKLNAREKAYSKFIYYKFFHGNTCPTIITEGKTDRIYLKAALHSLETSYPELFREKTDSKKKEINLNIFKSNEKTKYFLDLSGGTADLKKFVERYKNNYASYYGSVPKQPVIMVLDNDTGPSDLLNFLRNKVKSCPDDVTEMRKMKYIHVFYNLYIVLTPLSPSGEQTSMEDLFPKDILDIKIDGKKFNKNNDGDSKTEYGKHIFSMRVVRDKKRKIDFKAFCCIFDAIKDIKEHYKLMLNSLEHHHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (67-MER) | b | 67 | NA | TCCTTCGCACAGCACACCTGCCGTATAGCTCTGAATCAAGGATTTTAGGGAGGCGATTCCTCCTGCC |
| DNA (67-MER) | f | 67 | NA | TCCTTCGCACAGCACACCTGCCGTATAGCTCTGAATCAAGGATTTTAGGGAGGCGATTCCTCCTGCC |
| DNA (67-MER) | j | 67 | NA | TCCTTCGCACAGCACACCTGCCGTATAGCTCTGAATCAAGGATTTTAGGGAGGCGATTCCTCCTGCC |
| RNA (62-MER) | c | 62 | NA | CACGCAUGUAGGCAGAUUUGUUGGUUGUGAAUCGCAACCAGUGGCCUUAAUGGCAGGAGGAA |
| RNA (62-MER) | g | 62 | NA | CACGCAUGUAGGCAGAUUUGUUGGUUGUGAAUCGCAACCAGUGGCCUUAAUGGCAGGAGGAA |
| RNA (62-MER) | k | 62 | NA | CACGCAUGUAGGCAGAUUUGUUGGUUGUGAAUCGCAACCAGUGGCCUUAAUGGCAGGAGGAA |
| RNA (5'-R(*GP*UP*GP*CP*CP*UP*GP*CP*AP*UP*GP*CP*GP*U)-3') | d | 14 | NA | GUGCCUGCAUGCGU |
| RNA (5'-R(*GP*UP*GP*CP*CP*UP*GP*CP*AP*UP*GP*CP*GP*U)-3') | h | 14 | NA | GUGCCUGCAUGCGU |
| RNA (5'-R(*GP*UP*GP*CP*CP*UP*GP*CP*AP*UP*GP*CP*GP*U)-3') | l | 14 | NA | GUGCCUGCAUGCGU |
| DNA (5'-D(P*GP*GP*A)-3') | m | 3 | NA | GGA |
| DNA (5'-D(P*GP*GP*A)-3') | n | 3 | NA | GGA |
| DNA (5'-D(P*GP*GP*A)-3') | o | 3 | NA | GGA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-01-18 Deposition Author(s): Guan, Z.Y. , Wang, C. , Wang, Y.J. , Zou, T.T.