9LH2
Crystal structure of sars-cov-2 spike receptor-binding domain (delta) in complex with ph-dependent nanobody mnb-11.
PDB DOI: 10.2210/pdb9lh2/pdb
Classification: ANTIVIRAL PROTEIN Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos
Deposited: 2025-01-11 Deposition Author(s): Lu, G.W. , Zhang, X.D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.3 Å
Crystal structure of sars-cov-2 spike receptor-binding domain (delta) in complex with ph-dependent nanobody mnb-11.
Primary Citation of Related Structures: 9LH2
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike protein S1 | A | 218 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | VQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNK |
| Spike protein S1 | C | 218 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | VQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNK |
| MNb-11 | B | 134 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | QVQLVESGGGLVQPGGSLRLSCAASGFTFNRYAMSWVRQAPGKGREWVSGIYSDGSETYYTESVKGRFTISRDNAKNMLYLQMNSLKPEDTALYYCAKDHHAHEDHFNSGFDRKYDYWGQGTQVTVSSHHHHHH |
| MNb-11 | D | 134 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | QVQLVESGGGLVQPGGSLRLSCAASGFTFNRYAMSWVRQAPGKGREWVSGIYSDGSETYYTESVKGRFTISRDNAKNMLYLQMNSLKPEDTALYYCAKDHHAHEDHFNSGFDRKYDYWGQGTQVTVSSHHHHHH |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2025-01-11 Deposition Author(s): Lu, G.W. , Zhang, X.D.