PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9LGI

Cryo-em structure of a type ii-d crispr-cas9 in complex with single-guided rna and double-stranded dna

PDB DOI: 10.2210/pdb9lgi/pdb

Classification: HYDROLASE
Organism(s): Nitrospirae Bacterium Rbg_13_39_12 , Synthetic Construct

Deposited: 2025-01-10
Deposition Author(s): Wang, K. , Wang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.86 Å

9lgi
Literature

Cryo-em structure of a type ii-d crispr-cas9 in complex with single-guided rna and double-stranded dna

Wang, K. , Wang, Y.

Primary Citation of Related Structures: 9LGI


Proteins
Molecule Chains Sequence Length Organism Sequence
HNH nuclease domain-containing protein A 762 Nitrospirae Bacterium Rbg_13_39_12 , Synthetic Construct MEKELVLGIDYGGKYTGLAVVNQKNNQVLYARTVKMRDDVTDILAGRREQRSLRRTLQTKKKRLRELKNYLESIGGIYEESSGTFTIEPFRTVYSLAHKRGYDYADLPEEKTSEEIEAMDAKERKQWEKEKKELEETQRNSRHRDEVLRDVRNVMTEGNLSEEQIIKVESIFNKQYRHKRFNNRILTKCKVCGKNTPLRINVRELLLENIVRYLPLQNKERELLKLTILKGHQQDINEIFKHFRKVYKITLNQKDWPGKNLIDIARNQLRGRLLFCKVHFPENEKYVSIEKKTFRLAPSLKTKIENVLSVIKDDILPNFTLNNVVMESNNFDIAAKTKGKKRLLKEEYSKGHRESGETRKEALLRETDSRCIYCGKGIDLSNAHEDHIFPRKAGGINIFGNLVACCSVCNEEKRGRTPLESGILPKPEIVSFITNDLKKKILEDAQYINTLDFNKYMSHASIGWRHMRDRLRELTGNKELLIKRQSGIYTAYFRKWWGFIKERGNHGHHALDAVILASKKSYAEDGKVDMTIKPCGEDGKEFDIERHLSEMKEFRRDKGGKSAPLHDRNPLSFKNDIITRRFMVTEIECGKEAVIISEEYRKKLTEAFKRFGIAKGKYLTDEQAKDAGFYLRKNGEGVMSLKCEVKGTGYNQMIRIKNNIFKTNVHNVGVAVFLDEKGKKRACELKNPRLSKHFVKPAEQVKGKVIFILKRGNMVTVEGEEMIYRVKKLGTSPVIEAIVGSDGKTRTVSATKLLKINHTKKV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA (156-MER) b 156 NA GGUUAUAACUGAUAUAUGGGGUUACAGUUAAGGCUCUUUGAAAAAAGAGCCUUAAUUGUAAAACGCCUAUACGGUGAGGGUAUGUACGUUUGGGUUUGUCCAGCCUAAACCUCUACGCCAGAAAUGGCACCUUCAUUGUGGGUUAGGACAAUUUAA
DNA (41-MER) c 41 NA TCTAGAGGATCCCCCCATATATCAGTTATAACCGAATTCAC
DNA (41-MER) d 41 NA GTGAATTCCCAATATTGACTATATACCCGGGATCCTCTAGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-01-10
Deposition Author(s): Wang, K. , Wang, Y.